result

Gene information

Detail information of AfisC3G08836

Location

Gene	Chr	Start	End	Strand
AfisC3G08836	chr3	1572685950	1572686949	+

Sequences

CDS

Protein

Gene

>AfisC3G08836
GAGTTCTAGTCTTGCTTCTCACTTCTCCCAACCTACACGTACAAAAGAAAACACTTCTTGAAAAGAAAGAAGAAGAAGAAAATGTCAAAGAAGGGAACCGAAAATGAAGAAATAGAGCTTAGAAGAGGTCCATGGACACTTGAAGAAGACTCACTTCTCATCCATTACATTGCTCACCATGGCGAAGGTCGTTGGAATCTTCTTGCCAAATGTTCAGGTTGTTTATCTTATTCATATTGTTTTCAAAGTTCAATTATATACGTATGAATAACTTTACTTAAAAATATACATAGGATTGAAGAGGACAGGAAAGAGTTGCAGGTTAAGATGGCTAAACTACTTAAAACCAGATGTGAAGAGAGGAAACTTGTCACTTGAGGAGCAGTTCTTGATTCTTGAACTTCATTTCAAGTGGGGTAATAGGTAACTAACTATATATTACTTAAATTTCACAACATAATCATCATCAAAGTGAAGAAAGCATCTCTAATTAACGTTGAAACTTTTAACAAACTAAGGTGGTCAAGAATTGCTCAGCATCTACCTGGAAGGACAGACAACGAAATCAAAAACTACTGGCGAACAAGAGTGCAAAAGCAAGCTAAACAACTTAACGTGGATGCGAACAGTCCGATATTTCGAGATATGATAAGATTATATTGGATGCCAAAGCTGATCGAGAGGATAGCTTTTAACAATTCAAACAACAGTGTTGAACAAGTTACTCATATTGATCAACCTTCACAGTTCAATTCTTCAACAGAAAAATACTATATCGATCCAAATAGTAGCTCTAGCACCAATAATGATATTGAAGTGAGCAGCTGGGAGGATGAATTCTGGAACATGGATGAGTTGTTGCACGCTAGAAGTAGCATATTGTAGTAGTATTCAATTGGAAGATGGTACAAGGCATTTATTATTATGTATTTTTAGTTGGTTTCATGTAGTTTTGTTTGTATTTTTTTAGTGGTACAAATTATGTTTATTGGCTGCTTGT

Functional annotation

Database	accession number	e-value	annotation
nr	AIU39030.1	3.8e-70	myb transcription factor 1
Swissprot	Q9C9G7.1	6.4e-62	Myb-related protein 62
trEMBL	A0A097P5Z2	2.8e-70	Myb transcription factor 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68320.1	72.73	6e-62	233	AtMYB62;BW62B;BW62C;MYB62	myb domain protein 62

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08836	AT1G68320.1	143	39	0	12	154	18	160	72.73	6e-62	233
AfisC3G08836	AT1G25340.1	154	47	1	3	155	7	160	68.83	3e-60	228
AfisC3G08836	AT2G47190.1	165	62	1	2	165	9	173	61.82	1e-58	223

Ortholog group

Species	Genes
Allium cepa	g335681.t1
Allium fistulosum	AfisC3G08836
Allium sativum	Asa5G05404.1
Arabidopsis thaliana	AT1G68320.1
Oryza sativa	LOC_Os01g03720.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	15	62	61.1	7.2e-17
PF00249.28	Myb_DNA-binding	Domain	68	111	51.7	6.3e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009585	P	red, far-red light phototransduction
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009892	P	negative regulation of metabolic process
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0080086	P	stamen filament development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network