result

Gene information

Detail information of AfisC3G08954

Location

Gene	Chr	Start	End	Strand
AfisC3G08954	chr3	1595591573	1595592816	+

Sequences

CDS

Protein

Gene

>AfisC3G08954
ATGAGGGGACGTAAGTACTATCCGGTTTTGTATGACTATGAAAAAGTTGCGTTTTATTCAGATTTTTTGTACATTTTGTGTATGTATAAGAATCAAAATGTTGCTATTAAAATTTTGCACAAAGGGGATACAGTAGAAGAAATAGAGAAGAGAGAGGGTAAATTTATGAGAGAGGTTTCTATGCTTAGTAAAGTTCAGCACAAAAATCTTGTAAAGGTTGGATTTTGATTTATTTTTTGTTGATTCAAATTTGTTATCTTACTGTTATACTGTTAGATTCAACTTGGTTGTCCATAACCTCTCACTGAATTGCATGAATTAACCACGACAACATATTCCTGATAATAAGCAAATAAATTATTAGCATCATAAGAATTCAACCCTTGCATTTTGCACTGGCTAGATGAACTATTGTTGCGGATAGTTTAATTTAGATGGCAGTTGATTATCTGTTACTTTTACTGCAGTCCAAAATAATATCTGTTATTCTCTAATGTTGCATGAACATAAGATATAGAATGAATCTATTACTACATGAGTTATTTGTATGTTTTTTATCCACCTTTGTATCTAAGCAAAGTTATTAGCAAGATACTGTAATCTGTGGCATCAAACTCAAATTTAAAACTACTTACCGGCCTATAGGACACGTTCTATGTACAGTAAGAGTAGAACATCCATCTCTTATAGAGTGTTGAAGAAAACTCCAACTAAAGAAATAAATTTAATTGGTTTCCTTTCAGTTTTCCAATAACAAGTTTATAGGGTATTGGGAATGCTCTTAGAATAGGAGGCTGTAGTACCTCTACTTAGAAGTAAATTCAATAGCTAAACATCATCTAGCTGATTTGTATGCTTATTACATGATGAATGGGCTTGCTATGGAAGTGTTAGAATATGGGTGATGAGTGAGATTGCTATGGAAGGAGAGACTGATAAAGAGTGATCTGTTGTGTTTAAAGATAGTAGACAATTAGATATAAACTATATGGGCTTGAAATATATAAGACTATATGCAGTTCATTGGAGCTTGCAAGGAGCCCATGATGGTGGTGGTAACTGAGCTTCTGTTAGGAGGATCATTGAGAAAGTACTTGCTAAATATGAGGCCAAGAAGTTTAGACCTTCGTGTGGCAGTAGGATTCGCATTGGACATTTCTAGAGCCATGGAATGCTTGCACTCTCATGGAATCATTCATCGTGATCTGAAACCTGGTAAAAATATCTATATATTAGGAGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245673.1	1.7e-48	serine/threonine-protein kinase HT1-like
Swissprot	Q9ZQ31.2	1.6e-19	Serine/threonine/tyrosine-protein kinase 13
trEMBL	A0A5P1EBB2	1.2e-48	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G27560.1	72.88	1e-48	188	ATN1	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08954	AT3G27560.1	118	31	1	29	146	45	161	72.88	1e-48	188
AfisC3G08954	AT5G50180.1	118	30	1	29	146	39	155	73.73	2e-48	187
AfisC3G08954	AT5G40540.1	109	24	0	29	137	45	153	77.98	5e-48	186

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	30	136	81.1	6.8e-23

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001666	P	response to hypoxia
GO:0004674	F	protein serine/threonine kinase activity
GO:0005789	C	endoplasmic reticulum membrane
GO:0009686	P	gibberellin biosynthetic process
GO:0009744	P	response to sucrose
GO:0009750	P	response to fructose
GO:0009873	P	ethylene-activated signaling pathway
GO:0046777	P	protein autophosphorylation
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0071281	P	cellular response to iron ion
GO:2000035	P	regulation of stem cell division
GO:2000069	P	regulation of post-embryonic root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network