result

Gene information

Detail information of AfisC4G00223

Location

Gene	Chr	Start	End	Strand
AfisC4G00223	chr4	35681725	35687680	+

Sequences

CDS

Protein

Gene

>AfisC4G00223
ATGGCCAATTCTTCCGAAAACTACATGCAATTCTACCATGTGCCCCAGCAAAGTAGAAGAGAGAAATTGAGATACTCGCACGACGAGGAAGTATTGTTACTTTCAAACCCCAATAATTTGCTTTATTGCACAGCTAACCCTAACCAGCAGCAGCAACACCAGCAGCAGCAACACCAGCAGCAGCAGATCTACCTTTCGCTTTCGTCTTCGACCGCTTCCGCGGCGGCATCCTCCATGTGCCACCAGGCCGTGCCACGTCAGCAGCTGGGTCCTTTTACGGGATATGCTGAGATTCTGAGCAGGTCGAAGTTTCTAGAACCTGCTCGCTTGCTTCTGGAAGATATTTGCAACGTGGGAGGGGTTGTTGTCAATAGTGAAAATGTTGAGGGGCTGGATGCGTTTCTGATGGAGGTCGATCGTGAGATTTTAACAGGTAGTAGGATGGACGGTCGGATGGGTTCGGGTGCGGCGGCTGATCAGCAGGATCAGGCGCAGCTTGAATGGAAGGAGACCAAACTTGTTTCCATGCTTGATGAGGTAATAAAATTCTTGCTTTTGCGTAAAATTCGGAAGAATGCTAAAAATAATAATTATTGTGTTGAATTTTGTTGTCGTTGTTATTTTGGGAAAATATGTTTTGGGATTGGTTATTTAATTATTTAATTTTGATCAATGGATAAGGGGGTAGTTTTTTTTAGTATAATGTAAAGTATGGGTTTTGCTATATCTTGTCAATGATTTAGGGAATCTTGTTACTGTAGACATGATTTTATTGTGTGGTTGTCTGATTTTATTACTTTATTAAGTCGAGGGAAATCATTATTACTTCTTTTGAGAATTTTATGAAATTTAATAATCATATGATTTTATGGGCTAATGGGTAGATTTTAGAGTTAATGTATATACGTTGATATGTATTAATTATGGATTTAGCATCTTTATTATGTTTAAGTGTTCGATTTTACGTTGGTAGTTAGTTTTCCAAACTTTGAAAACCCTAATGTAGTCGATTATACTTTAATTATTGATTAATCTAGCGGTTAATTTTCAGTCCTGCCAGGCATTTGAATTTAGTCTGCTATTCTAGCTTAAGAATGTCTATCGTTAGCATGAAGCATGAATGTATATTAACGTTAAGGGTGCTTAGGGTGAATCATATTTGTCTGATTTCGTATGGTTTTCAAACATAAAAAACTTATGGTCTATTATATTAGCATGCAGCTATATTGTAGCTAGGTTAACTATTTATTACGAGATTTCATGGCACGTGCAATGTACGTGCATGTAAAAGATTTTTATAAAATTTTAAACTTCAGCGGAGTTTTCATAACAATAAATTGAAATATATAAGTAAAAAGATTGTAATTTTTGGTTGGAACAGAGTTTCGAACTTGTTACCTTGTTTACAATCCAAGATTTGCATTTATAATTAGATGTTAATATTTGTTCTCAGTGAGAGTCGAACTCCCGACCTTTTGTTTGTATATAAAGGCATTTTTGGTACTTTGTGGTCGGATTAAAAGATCGTGTTTTTGTTCCAACTATTAATAAAGATAGAAGTTGGATCTTGATTCGAGTTATTCTGAAGATAATTGTCAATGCTGCTTAATATGATTTTGATTTTATTTCAAAGTCTACCATATCCTAATTAAGTGGTGTTGAACTTTAACCATTCGGCATAATTTCCCATGCAATTTTTGATCAATGGATTGTTTGGCATGTTAATCAACAACACTATGGCCTGGCTAAATTTCAGAAATGCTGAGTTTTCCAAAAACATTAGAAGGATAATATATTAAAATTGGAAATCTCATAGGGTAGTTCAGTTGTAAATGAAATAGCGAGCGACAAAATGTCACAAGTTCGAACTATGCAGTGACGTATAACACCCTGTGTATATACTTCGTGCATGTATTGTAGATTCGATGCATATTTCATCAGAGTTTACAAGAGAATATTAATGTTAAAATTAGACAAAAATGTTTTGAGAAGGAAGAAAAATACAAAACAGATGGAAAGTTGCACACTGAATCACTTTTATCATATTTGTTTGTGTCTGCATATATGTTCATGGTTCTTAACATGTAAAAAATAGGATTTCTCTCTAAAACTTGAACGTGAAATGAAATGCTGGATTGTTTTTCCAAGTGCGATGTGATTAATTTTTGTTTGTGTACCACATCATGCATGCATTTTCTTTGCAGTAGAAATCTCTATAAAAAACACACACACAACCATTCCAAAAAACTTGTCTCAAGGAGCATTTCAAGACAAGGAAAAATAAAATGGTTTAAGTTTTGCACAAAGAGACTTTTTACCTTGAGCCTTACGACTCAACAGCTTGAGGAGCGGGCTTGCATGCCTTAAGCTGCTCAACAATGCCTCAAGAACTCTTTTACCTTCAATTAAAAATATTGGTCTAACAAAGTTGTGAAACCTTAAATATTTAAAAGCAAGAAAAAAAGAAAGAAAATTAAGTTGTGTTTTTTCAATTTTGAATTTCAATATAAGCAATTTAAATTAGTTTTTTGAAACTAACTACCAACGAAAGCATTTTGATGACCGTAAGATTGTTTTTTGAAATAACGATCGAAAGCTATGTAATGGATTTTTCAAACTCTATTTGAATAAATTTCTGAATTGTCGGCACTAAACCTTGGAATAAATTGTGTATCAATTTAAATTAGTAGAAAGAAAAAAATAACAAGTTAAACGATTTCCTACTGCTGGTAATAGACATCGTTTCTTCGATCGAAGATCATTTTCATACATCTAAAAAAATTGATGACAAATAATAGAAGAAAAAAAAAACCTGCTTTGGAGTTAAAAATTGAATATGAATTCTTCAAACTTACTAATAAGGTTTGAATCATGTGTGTGTGTGTGTATATATTAATAAGTGCTTAAATTTTATTTATAGTTTTACTTATTTATTTATACTTTTACGAATGAATAAAAATGAATGATGTGAATTCTTTAAAGTTAAGCGTTTGTATCGTTATTTATTTATTGTTTTATACGGTTAATTGTATCTTTTATTTATTAATCAGAAACTAATTGTAATAGGTAATATTAATTTACAGTTCAATGTTTATCCGAAAACTTAGGCTCGATGTTTTTAGGTTTATGCTAACCCTTATGAGCAAAAGAATGGCTCGTACACGGTTTCACCTTATACCACACGCCTGCATGCTCTCTGAGTCAGTATGCATTGCGTCCACATCATATCATCATCGTTGCCTTCTTCCCTACTGATTGTAGTTTTACAAATGAATTCTCATTTTTGATAATTTCTATCTTGAGTTATATCTTTAGTTGAATTGATTTTCTTAGGTCAGTTTTAATTCATTTGTTAAGTACTGGATGTTATGTCGGTTTGTACTCTCAAAATCCAACTTCACATCTAACTACTAGGCCATTATTTAGGTTTATATACCTACATGTATATACATATGAACAGTTGTAAAACAAAATTTGTTTTTTTACCTTTCTTTTCAATTAGGTATATAGAAGGTACAAACTATATTACCAACAGGTTCAGTCAGTGATTGCATCATTTGAGTCGGTGCCCGGTCTTAGTAGTGCTGCACCATATGCAGCCATGTCATTCAAAGCAATGTCGAAGCATTTCAAGTGTTTGAAAAATGCAATGTCGGAACAACTGGTACACATAAACAAGGGTACTGCCATGAAAGAAAGCTTTATCCAAGAGGAATCTAATTCTGGATTTGGACAAATTAATAGATTTGGAAGTAATAACTACAATAGTTTGAGACAACCTCATATCTGGCGACCACAGAGAGGGCTTCCTGAACGGGCAGTGGCGGTTCTTCGATCATGGCTCTTCGATCACTTCTTGCACCCGTAAGTGTATAACCATATACTTTATTTACATATTTTTTTACGCATGATGCATGCGTTGCCTTTTTTTATTTTGTGTAAAATATTACCCTTGCCAATTGTCGATCTTTTTCATAATTCAAGGACCTACTTTCTTGCTTTGAAATTTAATTCGTCCAATTTGGTTCAAGCTATTTTTTTTTTAAATTATGCAAGCTTGCCTCTTTATTTAACCAAAATTTTCAATTAAAAATGAACATCAACTTTGTCATTATTGAGTTTCAAATTCATATCCCCATTTATATATTACAACTTTCAATTGATAATATTTATTCAACTTTTGTAATAATTGACTTTCAACCTTTTGGATATTTACTATCTGACCAAAATTTTGTAAATTATTTACTGCTATTAATGAAGATGTGCCTGTAAACGTATATGCAAGTCAATATCTTAGATCAAACTTCAGAAACAACTAGAACACGAGAGGATCAGGCATTAATTTATGTTGTTCACTGAAAAAGAAGAGATGCGTTGCTAGGTCGATGCATGTTATTTTTTAGGAATTTACGGATCATGTATGTTTTACCTGCATATCCAAAAAAAATAGAGTAACATTTCACAATATTTAATTGTTGGATATTATGATCTGCTGCAAGTAATTAATATGAACCGTAGTATGACTGTCCTTTCCACTGTAATTTTGATCCAGTATTGTTTAATGCTACTCTTACTCAGACTATTTTTGAATGAAAAACAAGAGACTTGCTGGACCCACGATATATGTGGATTCCAAATTTCATTTTTGTCTTGTTAAATAAAGTTTATAATTGTTTAGTGTGCAGTTAAATTCCATAATTTGATAGGTTCAAGTTATTTAAATATTTCCGTTGATTAATTTACAGATACCCTTCAGACACTGACAAACAGATGCTGGCAAAACAAACTGGTCTAACAAGGAATCAGGTAAAAAAAAATAGAAAAGAAAAAATAAAAGCGTGTACATTTCATGATTAATTTGAAAAAGGAAACAAAATTGCAAGTTTACTTACAAAGATAGAATCATAGAAATCATCTAGAACTTGCTTTCTAAACAAGTGTGTCAAAGTTTACTTCAGAAGTACCATTTTTCCACTCCATCAGTAAAGTTTTCTGTATGAAATGATGCATGTATTCTATGAATTTAATTGGTCAACAGTATGAAAGATAACTTGTTCTTTGCAAATTCTGACAAATCACATGCCAAGTTACTAGTCAAACATACGTTGTTTTCTACTTGACATATCATGGCATTTCATCACGTACGTTAACTATTTTTGGACTAAACCAAATTAATGGCTGTGTGAATGTGGTAAAATTAGATATGTCTATTTATGTATGAACTTATTCTTGCATGCTTATTAGTGTGTCATATTAGTGTAAAGTCAATGGTTAAAGAAGAGTTATGACTGATTGTGAGAAGGTGGTTAAAAGTATTATATAATGAGAAGGTAAATGAAATGTTTTTTTTTAATATTGTAATAAAACAAAAATATTATTTTCTCTTATAACAAATAATACCATATGCTAATGAAACATTGATGATGGTGCAGGTCTCAAACTGGTTCATAAATGCTCGCGTCCGGCTATGGAAGCCAATGGTGGAAGAGATACACTCTCTTGAGGTACGAGAAGCTGCCAAAACCGACACAAACCAAAACAATAACGCCCTCGACAAGCAATCTCACCATCCATCTTCATCAACTGCGACATTATTCAACGGTGGTCAATCATCGTCCTCTAAACGACCTCACGATGACATGTCTCGAACCATTAATCCAAGCCATATTATCGACCAAGACCCCAGCTACGACAACCTCGTTACCTACAACAGTGGGTTCAACGTTGTACCAAATGGAGGGGTGTCACTAACGCTTGGGCTACACCATCCGTTTGGGCTTGGCCTAGAGGAGTGCAGTGACCCTTACGCGCTAGGGTCCTACGGAGGGCAGGACCGTCATTTGCTACATGACTTCGTAGGTGAGGCGTTGCTATGATATTAGCGTATGAAGCTGCTTCGAAAACGAAGTGTATTATTTATATAGTATTGAAATTTTTTTTTTACATGGTAGGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274689.1	1.8e-112	LOW QUALITY PROTEIN: BEL1-like homeodomain protein 9
Swissprot	Q9LZM8.1	5.9e-68	Protein VAAMANA
trEMBL	A0A5P1E8N2	4.1e-90	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G02030.1	40.13	7e-70	261	BLH9;BLR;HB-6;LSN;PNY;RPL;VAN	POX (plant homeobox) family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00223	AT5G02030.1	461	184	13	68	463	142	575	40.13	7e-70	261
AfisC4G00223	AT2G27990.1	375	178	11	89	463	253	584	41.07	1e-64	244
AfisC4G00223	AT2G16400.1	405	197	12	92	463	108	482	35.80	7e-56	215

Ortholog group

Species	Genes
Allium cepa	g297752.t1
Allium fistulosum	AfisC4G00223
Allium sativum	Asa4G00379.1
Arabidopsis thaliana	AT5G02030.1
Oryza sativa	LOC_Os01g62920.1; LOC_Os05g38120.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07526.8	POX	Domain	98	229	116.6	1.1e-33
PF05920.8	Homeobox_KN	Family	292	331	68.1	4.1e-19

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051015	F	actin filament binding
GO:0003785	F	actin monomer binding
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008285	P	negative regulation of cell proliferation
GO:0009610	P	response to symbiotic fungus
GO:0009640	P	photomorphogenesis
GO:0009737	P	response to abscisic acid
GO:0010051	P	xylem and phloem pattern formation
GO:0010076	P	maintenance of floral meristem identity
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010089	P	xylem development
GO:0010154	P	fruit development
GO:0010197	P	polar nucleus fusion
GO:0010201	P	response to continuous far red light stimulus by the high-irradiance response system
GO:0010223	P	secondary shoot formation
GO:0010227	P	floral organ abscission
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010229	P	inflorescence development
GO:0010371	P	regulation of gibberellin biosynthetic process
GO:0015629	C	actin cytoskeleton
GO:0015630	C	microtubule cytoskeleton
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030097	P	hemopoiesis
GO:0042803	F	protein homodimerization activity
GO:0046982	F	protein heterodimerization activity
GO:0048457	P	floral whorl morphogenesis
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0080006	P	internode patterning
GO:0090470	P	shoot organ boundary specification

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network