result

Gene information

Detail information of AfisC4G00226

Location

Gene	Chr	Start	End	Strand
AfisC4G00226	chr4	36533756	36536342	+

Sequences

CDS

>AfisC4G00226
ATGGGTTGTGTTCAAGCAAAGCCATTCATGGCATCACCTCTTCATTCAGGTCTGGCGAAGTTCAAACAAGATAGTGGGTACACACCAGCACCTCGTAAGCAATCTTTATCTAATACCAGTAAAGAAAGGAGAAGCAATGCCATCGGGAGGTATCATATGAGTGAAAACGAAAGCGAAAGCGATGTTGATTCTGATATTATAAAGAAAGAAAAGGCAGAAACTAATGTAGATATACTGAAGAAGGATAATGGGTGGCCCAAATGGTTGATTGAGCATATACCAAAGGAGATCCTTGATGGGTTGGTGCCCAAAAGTGCTGATTCCTATTATATGCTCAATAAGGTAGGTCAAGGAACATATAGCAATGTGTACAAAGCACGAGAACGAGACACAGGTAAAATTGTAGCACTAAAAAAAGTTCGGTTTGATACGACAGAACCAGAAAGCATAAGATTCATGGCAAGAGAGATTTTAATTCTGCAAAAGCTTGATCATCCAAATATCATAAAACTTGAAGGCCTTGCAACATCTAGAATGTCATGTAGTCTTTACTTAGTCTTCGAATTCATGCACTCTGATCTGGCAAGGGTCATATCTGGCACTGTGGGAAATCTCACTGAACCACAGGTGAAATGTTACATGCAGCAGTTGTTATCAGGACTGAAACATTTCCATGAGAGAGGTATATTGCATAGAGACATTAAAGGTTCAAACTTGTTGATTGATAAACAAGGGATGCTGAAAATTGCTGATTTTGGACTTGCAAACTATTTTGATCCGAAGAAGAAGAGACCTTTAACTAGTAGGGTAGTGACTTTGTGGTATAGGGCACCTGAATTGCTTTTAGGTGATACGGATTATGGGGTGGGCATCGATTTATGGAGTGTAGGGTGTTTGTTTGCAGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGAACAGAAGTTGAACAACTCCATAGAATATTTAAGCTGTGTGGTTCACCAACAGAAGAGTACTGGAAAAAACTTAAACTGTCTACAAGCTTTCGACCACCACATCCATACAGATCTAAAATTCTAGAGGCTTTTAAAGAATACCCTTCTTCCCTAAACTTGTTGCAGATTCTTTTGGCACTGGAACCTACATACCGTGGAAGTGCAGCTACTGCTCTTCAAAATGAATTCTTTAGCACAAGCCCTCAGGCGTGCAAAATATCTGATCTACATGTTGTGTACAAAGAAGAAGACGATGATCATTTTGTAAGACCACGTGAGAAAAGAAGAAATAAACGCAGAGCGCCAAAATTAAACCAGAGATCGTCCAAAGCAATGCAGCAGCCAGAAGATGCTGGACGTGCAATTACAAATCCTACACAGCGGATACAAACTGTGATAACCTATAGCCATGAGCTGGGCAGCACCACCGGTAGCTCTTCAGGCAGTCAGCCTCCAAGATACTCGGTTAGAATACCGCCTACACCGCCCAGGATAAAATTTTCACCTAAAAATAATGAACAAAGGAATGAATCCCTACCATTATTCCCAAAAGGAGACACTAAGGATACAAGGAAGAGCTATATTGGCATGGAGAAGAGGTCCCTCTCTACGTCAGTTTATCAAAGGCGTGATAAGATGCATATGCGTGCATTAGTAATTTGA

Protein

Gene

>AfisC4G00226
TCTTCATTATGTATCTCATTCTTTTGCATTATCATTCAAAACATTAATGGGTTGTGTTCAAGCAAAGCCATTCATGGCATCACCTCTTCATTCAGGTCTGGCGAAGTTCAAACAAGATAGTGGGTACACACCAGCACCTCGTAAGCAATCTTTATCTAATACCAGTAAAGAAAGGAGAAGCAATGCCATCGGGAGGTATCATATGAGTGAAAACGAAAGCGAAAGCGATGTTGATTCTGATATTATAAAGAAAGAAAAGGCAGAAACTAATGTAGATATACTGAAGAAGGATAATGGGTGGCCCAAATGGTTGATTGAGCATATACCAAAGGAGATCCTTGATGGGTTGGTGCCCAAAAGTGCTGATTCCTATTATATGCTCAATAAGGTATAAATTCATCCATTATATTCTGCTGCATAAACTACTGACCTATGCTTTCAGTTGATACTGATTCTGATGCAGGTAGGTCAAGGAACATATAGCAATGTGTACAAAGCACGAGAACGAGACACAGGTAAAATTGTAGCACTAAAAAAAGTTCGGTTTGATACGACAGAACCAGAAAGCATAAGATTCATGGCAAGAGAGATTTTAATTCTGCAAAAGCTTGATCATCCAAATATCATAAAACTTGAAGGCCTTGCAACATCTAGAATGTCATGTAGTCTTTACTTAGTCTTCGAATTCATGCACTCTGATCTGGCAAGGGTCATATCTGGCACTGTGGGAAATCTCACTGAACCACAGGTAGTATATTATTAACAATTTAGCACTGTGTCGGCAGTTGAACTGACTAGTACTTATTTACTATTGCAGGTGAAATGTTACATGCAGCAGTTGTTATCAGGACTGAAACATTTCCATGAGAGAGGTATATTGCATAGAGACATTAAAGGTTCAAACTTGTTGATTGATAAACAAGGGATGCTGAAAATTGCTGATTTTGGACTTGCAAACTATTTTGATCCGAAGAAGAAGAGACCTTTAACTAGTAGGGTAGTGACTTTGTGGTATAGGGCACCTGAATTGCTTTTAGGTGATACGGATTATGGGGTGGGCATCGATTTATGGAGTGTAGGGTGTTTGTTTGCAGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGAACAGAAGTAAGTTATTCTTTTTAAAAAAGGAAATAATAATGATGATCTGCTACATACATACACAGACTACTGTTATCATCTCCAGTTTCATAATTGCAAAATCTTAAGCTTGCCAGTGCATTAGTACTTCACTGTACTTACGAATGATTTGTGTATATTTACTGTCAGGTTGAACAACTCCATAGAATATTTAAGCTGTGTGGTTCACCAACAGAAGAGTACTGGAAAAAACTTAAACTGTCTACAAGCTTTCGACCACCACATCCATACAGATCTAAAATTCTAGAGGCTTTTAAAGAATACCCTTCTTCCCTAAACTTGTTGCAGATTCTTTTGGCACTGGAACCTACATACCGTGGAAGTGCAGCTACTGCTCTTCAAAATGAAGTAATAAATATATACATTTCACAGAACTTGTGCATTTTATTAATAATGTTTCAAACCCGACAAAGATAATTTGTTGCATTCTTATCATAGTTCTTTAGCACAAGCCCTCAGGCGTGCAAAATATCTGATCTACATGTTGTGTACAAAGAAGAAGACGATGATCATTTTGTAAGACCACGTGAGAAAAGAAGGTAAGTATCACATATTTGGGTTATGCAACATATAACAGTTATTATTTTGGATATGTCACAAGCGAATAATTCGGTTAGTATAGAAATAAACGCAGAGCGCCAAAATTAAACCAGAGATCGTCCAAAGCAATGCAGCAGCCAGAAGATGCTGGACGTGCAATTACAAATCCTACACAGGTCAGAATTTGAATTTTGTTATAATATTTTCTAGATGAAGCATCAAAGCAATATTTCTTCATTTGGAAATATTCCCCAGACAGATTATTTAAAAAACTCTTAAAACAAGTGGTTGCTGTATACATTTAAAGTTGGCCGTGGTTATCAGTTCATAATTCATGGAAGTTTCATAACAGTATAACAGGCTAACTAAAGATAATTAAAATATTGTTGCAGCGGATACAAACTGTGATAACCTATAGCCATGAGCTGGGCAGCACCACCGGTAGCTCTTCAGGCAGTCAGCCTCCAAGATACTCGGTTAGAATACCGCCTACACCGCCCAGGATAAAATTTTCACCTAAAAATAATGAACAAAGGAATGAATCCCTACCATTATTCCCAAAAGGAGACACTAAGGATACAAGGAAGAGCTATATTGGCATGGAGAAGAGGTCCCTCTCTACGTCAGTTTATCAAAGGCGTGATAAGATGCATATGCGTGCATTAGTAATTTGAATTACATGATTTTGTATGTAGTTGTGTCAAAATACATGTATATCTCGATTTACTGATCTTTTTTTACTAAACTGTTTGGTATGTTAATTAAAACCTGTAAATCGGATATATGTGACATCGTGTATTTATGCATTAATATAAAGGGTGTCTAGGAACTATTATAGTACTATGCTATGTAATTTAGATTATAAAATTGAGATGGGAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010932052.1	2.0e-155	probable serine/threonine-protein kinase At1g54610
Swissprot	Q9ZVM9.1	1.4e-121	Probable serine/threonine-protein kinase At1g54610
trEMBL	A0A834ZBJ4	4.8e-159	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G54610.2	57.14	1e-128	456		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00226	AT1G54610.2	392	154	5	84	463	94	483	57.14	1e-128	456
AfisC4G00226	AT1G54610.3	392	154	5	84	463	94	482	56.89	1e-127	453
AfisC4G00226	AT1G54610.1	392	154	5	84	463	94	482	56.89	1e-127	453

Ortholog group

Species	Genes
Allium cepa	g63530.t1
Allium fistulosum	AfisC4G00226
Allium sativum	Asa4G00366.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	111	390	227.4	1.7e-67

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0000979	F	RNA polymerase II core promoter sequence-specific DNA binding
GO:0001223	F	transcription coactivator binding
GO:0003682	F	chromatin binding
GO:0009615	P	response to virus
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0006282	P	regulation of DNA repair
GO:0007346	P	regulation of mitotic cell cycle
GO:0008024	C	cyclin/CDK positive transcription elongation factor complex
GO:0008353	F	RNA polymerase II carboxy-terminal domain kinase activity
GO:0042493	P	response to drug
GO:0010613	P	positive regulation of cardiac muscle hypertrophy
GO:0016605	C	PML body
GO:0019901	F	protein kinase binding
GO:0031297	P	replication fork processing
GO:0033129	P	positive regulation of histone phosphorylation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048366	P	leaf development
GO:0051147	P	regulation of muscle cell differentiation
GO:0071157	P	negative regulation of cell cycle arrest
GO:0071345	P	cellular response to cytokine stimulus
GO:0097322	F	7SK snRNA binding
GO:1900364	P	negative regulation of mRNA polyadenylation
GO:1903839	P	positive regulation of mRNA 3'-UTR binding
GO:2001168	P	positive regulation of histone H2B ubiquitination

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network