result

Gene information

Detail information of AfisC4G00440

Location

Gene	Chr	Start	End	Strand
AfisC4G00440	chr4	71327744	71332491	+

Sequences

CDS

>AfisC4G00440
ATGACCGATGTTCTTCTCCTTTTCATATCCATTCTTCTTACTGTGAAGCCTTCTTATGGCGATCCCGATAATATGGATCCTATGAAATGCTCTCGATCTTCACCTATCCAGACATGCAAATCCACGTTGTATATTCCATCTTATAATGGCCTATCCAAGTCTAATGTTGCGTCCATTTACTCTGCCAATATAAGCCTCATAGATACTATTGTTCGACAACAAAAACGTACAGATTTTCTAGCACAAGTGCCATGTAAATGTGAGGACATTGGTGATGGCATCACTGCCTACTTCCATGATACAAACTACACAGTAAAGGCCGGTGACTCTTCAGATAGTTTGACAAACACTGAGTTCAGCGGCGTAGCGTGGAACATAACTGCCACGCTTGATCCTGGTCAAAACCTAACAGTACATCTATTATGTGGGTGCGATGCAAATTCGAATTCAAATACAAATGACAGCAAAGATATTGTGAGCTATACTGTGCAAAAGGGGGATACACTCTCTTCTATTGCTAGTTTGTTTTTGGCAGATGTGGAAGTAACAAAGAGTTTAAATGTGAAAATTTTGGTGGACCCGAATTTTTTGAGGCCGGGTTGGGTGTTGTTTGTGCCCATCGGAACAGCTAAAGATGGTGATATCAATCCAGGGAACAAGAAAAAGGACAGCACTGCATTGATTCTTGGTATCACATTTTCAATAGCCTTCATTCTGTTAGGGGTTATACTTGCAATCTACCGTAATTGGAAGCAATCACATAAAAAAACCTCAGAATTACCAAAAAAGATGGAAAGAAATACAAGTCTTATGAGCATTGCTGCACTTGAGAACCAATACCATCACAAAGATAATATGCAAGATATAGAACAAACCAATACAGAAAGACCCATCATATTCAGTCTGTCGGATGTGGAAAAGGCCACATTAAACTTCGACGAAACAAGGATGATTGGAGAAGGTGGCTTTGGTCGTGTATATTATGGAATGCTCGGAAATCAGGAGGTTGCAATAAAAAGGATGAAGTCGAGTAAATCGAAGGAGTTCTTTGCAGAGCTTAAGGTGCTATGCAAAATACACCACATCAATGTGGTTGAGCTGATAGGGTATGCTAGTGGCGATGACCACTTGTACTTAGTCTACGAGTATGTTCGATATGGTTCTCTCAATGATCATCTCCATGATCCATTGCTAAAAGGTCATCAGCCACTTTCTTGGAATGCAAGGGCACAGATTGCACTAGATGCTGCAAGAGGGATCGAGTACATTCATGATCATACGAAAGCACATTATGTGCACCGTGACATAAAAACCAGCAATATTTTACTGGATGAGGGACTCAGAGCTAAGGTGGCGGATTTTGGTTTAGTGAAGCTTGTAGAGCGCAGCAGTGAAGACGATTGCATGGCAACTCGCTTAGTTGGAACTCCAGGCTATCTTCCACCAGAATCAGTTCGGGAACTCCAGATGACATCGAAAGGAGATGTCTTTGCATTTGGAGTGGTTCTAGCGGAGTTGATAACAGGTTGTCATGCTCTTACGAGAGACAACAAAGAAACAAGCAAGATGAAATCACTTATTTCAGTTATGCGCAAAGTATTTGAAGAAGATGATCCTGAACCGGAGTTGGAAGCTATTGTTGATGGCTACCTAGGAGACAGCTACCCAATGGAGCAAGTTTATAAGATGGCAGAGATTTCGGTCTGGTGTCTGGATGAGGAACCGGTGGATCGTCCAGAAATGAGAGAGATAACAGTAGAACTCTCTCAGATAGTAATGGCTACAAAAGAATGGGAGGCATCCCTCGCAGGCAATAGTCAAGTCTTTAGTGGTGTTTTTAATGGTAGATGA

Protein

Gene

>AfisC4G00440
CTTTCCAACAACAATAAGACCTGTATTCCTCAACTGTTTCTAAACAATAAGCAATGACCGATGTTCTTCTCCTTTTCATATCCATTCTTCTTACTGTGAAGCCTTCTTATGGCGATCCCGATAATATGGATCCTATGAAATGCTCTCGATCTTCACCTATCCAGACATGCAAATCCACGTTGTATATTCCATCTTATAATGGCCTATCCAAGTCTAATGTTGCGTCCATTTACTCTGCCAATATAAGCCTCATAGATACTGTAAGTAGTCATTCCAACCTACTAACTACAACTCTTATATATTGATAGAGATGAATAGGACACCGACCATACAATAGATAATTCAAACTAGTGGAAAGGATTTATTCATTGAGATTCAACCATTGTACCAATTAGAATACATATGAATCTTCTCTAAATTTTTGTTAAAAAATGAGCAATTCTTATTAACCTTGTATTACACAGATTGTTCGACAACAAAAACGTACAGATTTTCTAGCACAAGTGCCATGTAAATGTGAGGACATTGGTGATGGCATCACTGCCTACTTCCATGATACAAACTACACAGTAAAGGCCGGTGACTCTTCAGATAGTTTGACAAACACTGAGTTCAGCGGCGTAGCGTGGAACATAACTGCCACGCTTGATCCTGGTCAAAACCTAACAGTACATCTATTATGTGGGTGCGATGCAAATTCGAATTCAAATACAAATGACAGCAAAGATATTGTGAGCTATACTGTGCAAAAGGGGGATACACTCTCTTCTATTGCTAGTTTGTTTTTGGCAGATGTGGAAGTAACAAAGAGTTTAAATGTGAAAATTTTGGTGGACCCGAATTTTTTGAGGCCGGGTTGGGTGTTGTTTGTGCCCATCGGAACAGCTAAAGATGGTGGTAAGTATCTATTATTAGTACTAATTAACTAGCATTTCCACACCCTATGCTCATTCATTTCATAGTTGTCAATGATGTTATTTGTGTGTTCACTATAGGGCTGTCAATGGGTCGGGTCAAGTCGGGTTCGGGTTGATTTTAAATGGGTCGGGTCAACCCGTTTATTAAACGGGTCAGAAAAAGCTCAACCCGAACCCGACCCGTTTATAAACGGGTTGACCCGACCCGACCCGTGTAACCCGATTATAAACGGGTCAGGTCGGGTCGGGTCGTAAATGGGTCGGGTCAACCCGTATAAGGTATAATTGGATCGTAAACGGATCAGAACGGATCGTAAACGGGTCGGATCAACCCGTATAACCCGTATAAGGTACAAACGGGTCATAAACGGGTCGTGTCGGATCGTAAACGGGTCGGATCAACCTATATAAGTATAAACGGGTAGTTAACGGGTCAATTTCGAGTTAGCGGGTCAACCCAAAACCCACCCGTTTATAAACGGGTCAAATTCGGGTTGACCCGAAAATGACCCGCCAAATTAACGGGTCGGGTTAACCTGCTAATTTCTGTACGGGTTTCGGGTCGTGTAGGAAATCGACAGCCCTCACATACCATATATTTTATTTACTAATACGGGCGACGATGTGTGTACGTTGTTTGTTGCATGTGCATTTTATGCATGTGTACATATGCGTACATATACTCATATATGTACATATGTTATGTTTAATGTATTCCATTTGCACATATAATATATACATGTGGACATGTTAGATGATAATCATGTATGAGAAACACGTCCATCTCCCCTTTTAATTTTAGTCTCCCACTCTTCCCAATCTACTATGTCGTCTTACATTTTACATTCATTTGTCAACTTGTGTAAGGTCAACTTTATCATTTCACTCGGACATTTGGAAGGGTCCAAAGCATGGGTTTTAATTGTTAATGAAAAGATACATACATATGATAGATAGATAGAAAAATTCCTTTACAAATATATAAACATAAGATGAAACTCACTTTCAAAAGTAGCAACTCGTTAATATTGAAATATGATATACAATATATATCAATATGAAGAGCATTTTAACAGTAAAAACAGTTTGCAAATTGGAATTACAACAACGGAGTTATAACCATTCCTTGTTTAAGGCAGCAAACTGAGAAATTTCTTGTATTATCACCAGTCAAAACTTGTTTGTGCAAGGAATTCTGGTTGGAATCCAGAACAGATCATCATGCAAAATATGTTGATGATCGGTCTTTGCCTAAGTTCCAAACTGAGCTCAAAACAGCTCATCACCTATTTTTCATTGGTGATCTATCTAAGTGTAAATTGGGATGTTTGGACTGTTTTGGATTACAAGCCTTGCAAACAAACCTGATTTGACGATCATGATCTATTGGCGACTAGTGTCATTTATTTTCAGTTATATTCTATTTCTGGTTGTCTGTGAATTTTTGTAGCCGTGATAAGTTGTGAAGTAGGTTTTTTGGAGATTATCTGTGAGTTTGTTTGTTTATATATCTACCACTTGTAGTGCCCTGTCTTCCACAATCAGAGAGTGTCTTGGATTCTTGCTAATTTAGAACCCAAAATCCACAACATAGCAGAACAATACCTTATTATCATATCTCGTTCTGACTTTATGCACCATAAGTTAAATATCTAAATCATTGTGATCAATATAGTAACATAAGTTAAATAATTTTCTTACATCCAGATATCAATCCAGGGAACAAGAAAAAGGACAGCACTGCATTGATTCTTGGTATCACATTTTCAATAGCCTTCATTCTGTTAGGGGTTATACTTGCAATCTACCGTAATTGGAAGCAATCACATAAAAAAACCTCAGAATTACCAAAAAAGATGGAAAGAAATACAAGTCTTATGAGCATTGCTGCACTTGAGAACCAATACCATCACAAAGATAATATGCAAGGTAAGACAATTTCTTACTGTTAGGTTAATTTTGTGTAAGCTACGTACATCAAGTTGAAGATCATCATATGTGTGTGTAGATATAGAACAAACCAATACAGAAAGACCCATCATATTCAGTCTGTCGGATGTGGAAAAGGCCACATTAAACTTCGACGAAACAAGGATGATTGGAGAAGGTGGCTTTGGTCGTGTATATTATGGAATGCTCGGAAATCAGGTAAAAATAAATAAAGATTCTGCAATATGTTGTCTTGTATATAAGTTCAAACTTTAACAGTTTCAGACTCAGTAATTCTTCTGTTGCTATAGGAGGTTGCAATAAAAAGGATGAAGTCGAGTAAATCGAAGGAGTTCTTTGCAGAGCTTAAGGTGCTATGCAAAATACACCACATCAATGTGGTATGATATCTAGACATCCAAACATAAAGATAATGAATCATTGTGAAATATCCAATGTCTTATTGTGTTGATCTGAATTATCAACAGGTTGAGCTGATAGGGTATGCTAGTGGCGATGACCACTTGTACTTAGTCTACGAGTATGTTCGATATGGTTCTCTCAATGATCATCTCCATGATCCATTGCTAAAAGGTACAGCATAAGCAAAAGCCATAGAAGTTATGTTATATGTGTTTCATATGGCTTTCCTAAATTGAAGTGCCTTAAGTATATATATATATTGTAACAACTAACAACTGTCACAGGTCATCAGCCACTTTCTTGGAATGCAAGGGCACAGATTGCACTAGATGCTGCAAGAGGGATCGAGTACATTCATGATCATACGAAAGCACATTATGTGCACCGTGACATAAAAACCAGCAATATTTTACTGGATGAGGGACTCAGAGCTAAGGTCGGTTATCTACCTACCTATCTATAATATGTTGAATTGAATACACAGCTCAATGTACATGCATATCAGACATGAAATGTTGGATTAGTCATGTTCCAGGTGGCGGATTTTGGTTTAGTGAAGCTTGTAGAGCGCAGCAGTGAAGACGATTGCATGGCAACTCGCTTAGTTGGAACTCCAGGCTATCTTCCACCAGAGTAATCCATATTTCATATTCATATGGATTTGAATAAGCGGTGTACATTATATATAATGGGGAATAAAAGTTGACAATCAATGATACACACTTGTAGATCAGTTCGGGAACTCCAGATGACATCGAAAGGAGATGTCTTTGCATTTGGAGTGGTTCTAGCGGAGTTGATAACAGGTTGTCATGCTCTTACGAGAGACAACAAAGAAACAAGCAAGATGAAATCACTTATTTCAGTTGTAAAGTTTCTTGCACTGGTTTTTATTTTATTTTATTCAATACAGCGATTATGTATTATTTTCTAATTGGATTGTAAAAGTAAACAGATGCGCAAAGTATTTGAAGAAGATGATCCTGAACCGGAGTTGGAAGCTATTGTTGATGGCTACCTAGGAGACAGCTACCCAATGGAGCAAGTTTATAAGGTCGGTTTTGTAGAATAATGAGCATGGGCTGTACACAATACGCACTATATCCATAAGCATCCATATTTGAACCACAAAGATACATAGCATATTAAATTATTAATCATCTGTTAAATTTTTTTTTTTTTTGTTAACAATATATACAGATGGCAGAGATTTCGGTCTGGTGTCTGGATGAGGAACCGGTGGATCGTCCAGAAATGAGAGAGATAACAGTAGAACTCTCTCAGATAGTAATGGCTACAAAAGAATGGGAGGCATCCCTCGCAGGCAATAGTCAAGTCTTTAGTGGTGTTTTTAATGGTAGATGATTACTGCATTAACGTGGTATATGTAATTAAATAATATTGTAGAATGAGTTAGATTAGAGGTCTAAATATTGGATTTATGTAAGATAACATTGGGATGGATGTTATGGTTGTGTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265215.1	9.7e-215	lysM domain receptor-like kinase 3
Swissprot	F4IB81.1	8.0e-97	LysM domain receptor-like kinase 3
trEMBL	A0A5P1EVG3	7.0e-215	LysM domain receptor-like kinase 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G51940.1	51.98	4e-99	359	LYK3	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00440	AT1G51940.1	329	150	3	295	616	324	651	51.98	4e-99	359
AfisC4G00440	AT3G21630.1	562	321	15	60	607	69	606	36.12	2e-87	320
AfisC4G00440	AT2G28590.1	325	177	8	288	601	68	383	39.38	7e-57	218

Ortholog group

Species	Genes
Allium cepa	g99300.t1
Allium fistulosum	AfisC4G00440
Allium sativum	Asa4G00766.1; Asa4G03248.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g36550.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01476.17	LysM	Domain	161	206	30.2	3.3e-07
PF00069.22	Pkinase	Domain	313	584	172.7	8.8e-51

Gene Ontology

Accession	Ontology	Name
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0002237	P	response to molecule of bacterial origin
GO:0004674	F	protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007166	P	cell surface receptor signaling pathway
GO:0009593	P	detection of chemical stimulus
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019901	F	protein kinase binding
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0043167	F	ion binding
GO:0044444	C	cytoplasmic part
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0097367	F	carbohydrate derivative binding
GO:0098581	P	detection of external biotic stimulus
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network