result

Gene information

Detail information of AfisC4G00467

Location

Gene	Chr	Start	End	Strand
AfisC4G00467	chr4	75599836	75602118	+

Sequences

CDS

Protein

Gene

>AfisC4G00467
TTAAGTCAGCTATAATGTAAAACTGATAATTTGATATATCATGTAACTTTAGAGATATTTTTGTTACATTTGCCATTTACAGTCAAATCTGATGAAAGGTCAGATTGAATAAATGGTCTTGTTTGTCTCTATTTTTTAATGGACCCAAGTTATATGTAAATAGCTCTTTTAATATTTTTAACTTCTTACTGGGACAGGTTATTCTTTTTCCAAATTAAGCACACAACTTGCCTTTTACTCATATAAATATAGATGGCATACCCTGTGGTGCTAGTCATTTCATTACTTGGTATTGTATCAAATTCAGCATAAAATTATACTCTATACTTTTATGTGTTCTGTTTCTTGATAAAATATACAGATAGAGAAACGAAGAAAGAATGGGAAGGCAACCATGCTGCGATAAAATAGGATTGAAGAAAGGGCCATGGACTGCTGATGAAGATAAAAAGTTGATCAATTTCATCTTAACTAATGGTCAATGTTGCTGGAGAGCTGTGCCTAAGCTTGCAGGTTTTTATATTCACTAATTCATCTTAATTTATCCATTTGTTTTCTGATTTTTGCTATTGTATTCGTTATCACATTATTCTTAATTTTTGGGGACCTAACTTGTTAAATTTTCTTTGCATGTGCTTCAATCTTGATGGAAATTGTTGTTATGTTGAGGTTTCATGCAATGGAGTTTTAATTTTTGCATTTCTCAGATTATTTATGTACTGTGATTTTTGGAGAATATGTTGGCGAATTAAAAAATTTAATGCATAATTTGATAGGCAGTTTATATTGAAATTTATTTAAAATTTGTTATTGTTACTTATTTGGGAAATTTTTATATAGTTTTTTATGGAAAATAAAATAATATAAAAATTTAATATCAAATCAATGATTCTGAATAGTTGGGTTTGATTTTGATTGCAGTATCTTACTTTATGGTAATGGGATAATGCTAAATTTCTATTTATTTTAGTGACACAGTAGTCAAAATGTAAATTTTGCAAGAAAACTAAAATACTAAAAGCAAAAAAAGTTATATGTGCTTTTGATTTAGTATACAAGTAATATTCATACCTACTTTATATGTTTAATAATAAAAAATGAACAAAGTTTCAAATTTTAAACTGCAGGTTTGCTGAGGTGTGGCAAAAGCTGTAGATTGAGATGGACAAATTACCTGAGGCCTGATTTAAAAAGAGGCTTGCTTTCAGATTCTGAGGAGAAACTGGTCATTGACCTTCATTCCCAACTGGGAAACAGGTACACTTATTTCTTCTATGAAATTATAAATTATTTGGAAACTTGAATTAGCAGTCAATTCATGCTTTTGCACTTCATTTTCTCCAACACAGTTTCAATGGGTTGAATACTATTTTACCGAATTCATTTAACATTTAACCGAATGTAATTTTGTACAAAACAGTGGGATCTAGCTGGATTTCGATTGATGGATTTCAGCAACTTTTTAAGCTACTAAATAGACTAAAATGCTACTAATGATTAGTACTACCATTAAAATACAACAATCTATTTGATAGTTTCATAGTTATCCTGGGATCCACACTAATAATCTGATCAATACTATATGTTTTTTTTTtTAATGAATCTAACTGTTAAGAATATGTGAATATGCAAGCTGACTTTTTAATCCAAATATGCCTTCGATTAAAACATTGTAGATGGTCAAAAATAGCATCTCATTTACCGGGAAGAACCGATAACGAGATCAAGAATCACTGGAACACTCACATAAAGAAGAAGCTAAAGAAAATGGGAATTGATCCTTTAACTCACAAACCCCTACCTTTGAGCCTGGAAAACGAGCAAAAAGATCAGAAAGAAGAAGAGAAAAACACAGGAAACAAAGAAGCCGAGAATGCAGTTGTAAACGAGATCGATAATGTCATTACAATTCAAGAATTTGATGAGTTTTGCACGGATGAAGTGCCTATGATACAACCTCATGAAATAATAGTTCCAGACATGGCCATGACTACAAATATCGATCGATGTACTTCGACTTCTTCGCAGTCTTCTTCGTTGTCGTCTTCGAATAACAACAACTGGGTGGAAAACGATATGGGATGGCATGAATCATCAATGGACCTGTGGGGGCTGGAAGACATTTTGAATTGGGACTCTTCATTTTGCAGTAGTGATGATAACACTGGAAAGTTGGCAAATGAGCCTTTTGGCACTCAACACTATCAAAGTAGTGCTACTGCTGTTACTGCTGCTGGTAGTAATGCATTTGATCATGAATCCTGGAAGTTTGAGCTCTTCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269974.1	3.6e-87	protein ODORANT1-like
Swissprot	Q9C7U7.1	3.4e-74	Myb-related protein 20
trEMBL	A0A5P1EJY4	2.6e-87	Protein ODORANT1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66230.1	69.43	1e-74	276	AtMYB20;MYB20	myb domain protein 20

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00467	AT1G66230.1	193	47	2	1	181	1	193	69.43	1e-74	276
AfisC4G00467	AT5G16600.1	199	58	1	1	187	1	199	64.82	4e-74	275
AfisC4G00467	AT4G12350.1	165	44	1	1	165	1	164	72.73	1e-66	249

Ortholog group

Species	Genes
Allium cepa	g537525.t1
Allium fistulosum	AfisC4G00467
Allium sativum	Asa4G00505.1
Arabidopsis thaliana	AT1G66230.1; AT4G22680.1
Oryza sativa	LOC_Os06g14670.1; LOC_Os08g33150.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	51.9	5.4e-14
PF00249.28	Myb_DNA-binding	Domain	71	111	54.2	1.1e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network