result

Gene information

Detail information of AfisC4G00626

Location

Gene	Chr	Start	End	Strand
AfisC4G00626	chr4	105478477	105480849	-

Sequences

CDS

Protein

Gene

>AfisC4G00626
CCTTCCTTCAGTCAAATTTATCTTCTTCACCCGTCTACTCCTAAATACATGAAACTTCATCTCTGAAAAACTGATTAAACTTTTTTTTATAGAAAAATGGGTTTAGATGGAGAAGATATGGCAAAGAAAGAGAAAGAAGAAGGGTCAAGGGAAAGACCCCTTTTTTCTTCTTCTATCGTTTGCCTTTCTTTTCTTCAGAGATAATATATATTCAAACCGTAAAATTTCGTAGTCCCACATCATATAAACGTTTTTGAAACTTCTTCCCTTCCTGTTAAACCAAGCAGTAATTGATTCTGATGAAAAGACTCAGCAGCTCCGACTCTTTAGTTCCCATCTGTCCTCCTGGTAAATTTGCATATAACACCACCTTATTTTTCGCTTTTTTTACAAATTGTTGTTTCCGTTTGTTAGATAGCTCTTTTCTTTCTAGTTAGTGTTTTCATTTATCAATTCATTTGTCATGTTAATTCCATATTTGAATTTACTTGGAATTTTTTTGTTTTTCAATTTCAAAAACATAAAACTACTGTTGATTACTATGTCCTCTTGAAGAGTAGGTGGAGTTTGAAGTTTGAAAGATCATTTGATAATATAGACTAGATTTGCAAGTGGAAACATCGAAGTTTTTGAAATGCTTCAGATAGTTGTCACTCACTTTTATTCAGCAATTAGAAGAACTGGGCAACGTTGAAATAGATGCTTATGATTTAAATACACTTCACAAGTTATTGATTTCAGCACAGTCGCCATTATCATCTTGATCTTAGAATTATAACATTAAGTTCTCGTCAACGATTCCATTAGTAACTCACATGAACACATACCTTTTGTTTTAAGATTTAAACATGTTTGATCTACTTCCCAAACTGGTGATGTTTCCACAAACAAATCTCTAGTCCAATTTGATATCATCAAATGAAGCTTCAACTTCAAACGCCACCTAATCTTCAAGCGGACATGATAATCGACAGTAGTTTATGCTTTTGAAATTCAGAACCAACAAATTTGTTGGAGCAAATTCAAACATGTCCTCTATGATATACCTGTGATTATACTTTATGGCATAACATGCTAGAGAGGGATTTATTCAAAGTTTTCAAGCATTAAGTATGAGATCTAATGATTCTGAATGACCGTTGCTTGATACATAAGTTGATCTGGATGATTAGATATTGATCTAATGACATAGATCTCACAATATTTTCAGGCTTACAAATATGTAATTTAATATACTGGCACAGTAGAATTGTGAAAACATCCCAGAACGTTTCATGCTTACAGATTAATACTTGTATAGAATGGCTTGAGGACGATGAAGACATAGCAGAAGAAGCAGTAGGTCAACGAGGAGAGAAAAAGAGACGGTTACACTCAGACCAAGTAAAAGCACTAGAAAAGAGCTTTGAAGTAGAAAACAAGCTCGAACCAGAGCGAAAGGCCAGGCTAGCGCACGAGCTAGGCCTGCAGCCACGGCAGGTAGCAATTTGGTTCCAAAACAGACGTGCCAGGTGGAAGACCAAACAGCTCGAGCGTGATTATGGAGATCTTAAGTCTAAATATGATGCATTGCGCACCGATTATGATGCCCTTGTTAGAGACAAAGAATCACTTCTTGATCAGGTAATTTTACCCTTCAGTCTAATTTTGGAGTTCAGAATATAATGTTAAATTATGTGCTTTCTTTTACTAATGTAATGACAATTTAAACAGGTAATGAATTTAAAGGCAAAAGTGGGAGGCAGTGGAGAAGAAAGCTTCTCCTCCATTAACGAAGAGAGAATAGCATCCGAAAACGAGATCAAACACATAGAAGAAGATGCACATCCTCCTCTTATTTACAAAGATGGGTCATCGGACAGTGGCTCAAGCGCAATCCTTAATGATTTCAACGATCAAGAGAATGGCACTCTTATTTCTTTTAAGATGGACCATCAAGTCATCTCTTCCTTATCGCCTCCATTGTTCTATCATCGTGTTAAAGTTGAAGAGGACGACGATGAGTTTCTCAATGAGGATGGGCCTTGTAGTTCAACCTTTTTTCATGATGAGCAGGCTCACATGCTCTCATGGTACTGTGGTGAAGGCTGGGATTAGAGCTTTTGTATGTAGGTATAAAGCTGCATTATCAATTATGTATGTAGAATTGTAGATTTCTATGTTGTTGTTGTAGTAGTAGTGGTACAGATGGTGATTTGTATAAAAATTTGCAAGGGCAAGGGTGCGATAAAAGGGTGAAATCTCCTTTTGGATGGAATAATAATATTTGTCTTTGTTATGCAATTTAAAATTGCAGTGTGGATATTGTAGAATATATTAATAGGTGCTGTGTTCGCTTGTTTATTGCTTGCCCGCTGTTTAAAGGCATAATCA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026660788.1	2.5e-44	homeobox-leucine zipper protein HOX20-like isoform X2
Swissprot	Q940J1.2	8.2e-32	Homeodomain transcription factor ATHB-16
trEMBL	A0A8B9AX11	1.2e-43	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G40060.1	40.98	3e-46	181	ATHB-16;ATHB16;HB16	homeobox protein 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00626	AT4G40060.1	305	106	9	1	247	1	289	40.98	3e-46	181
AfisC4G00626	AT2G22430.1	311	114	11	1	245	2	304	39.55	3e-40	162
AfisC4G00626	AT5G65310.2	269	117	9	19	251	32	293	40.52	1e-38	156

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	36	89	60.1	1.2e-16
PF02183.15	HALZ	Family	91	132	59.6	2.3e-16

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009739	P	response to gibberellin
GO:0009787	P	regulation of abscisic acid-activated signaling pathway
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network