result

Gene information

Detail information of AfisC4G00794

Location

Gene	Chr	Start	End	Strand
AfisC4G00794	chr4	137592517	137595920	+

Sequences

CDS

>AfisC4G00794
ATGGATGATCAAGAGCAACATTCAAACTATCAAAGACCACATTTCCCTCTCCAACTTCTTGATAACAACAACAACAATAATAAGCAAGAACCTCAAGAAATCATCCCCTACCCATCAACTCTCTCCATATCTCCTTCATCTTCCTCATTAGCCATCGCTGGCCCTTCATCCTCCTCGGCTGAACCTCAAAAGAAGCCTCCTCCTAAACGTACTTCCACAAAGGATCGCCATACCAAAGTAGAAGGCAGAGGGCGGAGGATCCGGATGCCTGCCCTGTGCGCAGCACGGGTCTTCCAACTAACAAGAGAACTGGGTCATAAATCAGATGGAGAAACCATAGAGTGGCTGCTCCAGCAAGCCGAGCCTGCTGTAATCGCTGCCACAGGAACCGGCACCATTCCTGCCAACTTTACATCACTGAATATTTCTTTGAGGTCTTCTGGCTCTTCTATTTCTGCTCCCAGCTACTTTAATCAGAGGCACGCTGCCCTTTTCCAGGCTGGCTGTGCCTCAACATCGCCTCCTCAAACTCTACTAAGCTTCCAGACCGGTTCCTTAGGGTTGGAAGGTTCTGAGAACGATCCTGCAAGCTTCCGGAAGAGACGGTGGGAGCAGGAGATTAGTTTACAGCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAACAGCAGCAACAAATGGCTGGGTACAGCCAGTTGCCGGGTGCGCTATGGATGATGGCGAACCCTAATAATAGCAGTAATAATAACAACCCTAATAGTAGTTTAGGGAATCAAGGAATGGGGGGTGAGTCCTCGAGTTCCATATGGGCTACATTTCCGCAGATGGGGTTTAGGGCGACGGCTGGGATTGGGTCTGTGACCAACACGGGGTTGCATTTTATGAATTTTCCGACACCCATGGCTTTGATGGCTGGTCAGCAGCTTGGGTTGGGGACTGGAGGTGGTGATGGGGGTAATTTGGGAATTATGGCCTCGAGGGCGATATGGGAATCTCAACAACAGCAACAACAACAGCAGCAGCAACAACAACATCAAGGAGGGAGTACTAGCGAGAGGCACGATACGATGAGCACGAGCGATGACTCCGTCGGAAATCAGGGCCAGCCCCAGGGTAAAACGAGCAAGCAAATTGCTTAG

Protein

Gene

>AfisC4G00794
TATCCTCCTCTCTCTCTTTCGTCCCAACACAAACACATGGTTGTCCTCTAACCTCCATACAAATTCTCATTAATCTACATCCTCAAACAAATTCAAATACTAGTCCTCCACCACATCACAAACAAAGAAAATTGAATCCTATACATGGCAAATTAGCTAGCCCATCAAAAAAAAGGAACTCAACAAAAAAAATGGATGATCAAGAGCAACATTCAAACTATCAAAGACCACATTTCCCTCTCCAACTTCTTGATAACAACAACAACAATAATAAGCAAGAACCTCAAGAAATCATCCCCTACCCATCAACTCTCTCCATATCTCCTTCATCTTCCTCATTAGCCATCGCTGGCCCTTCATCCTCCTCGGCTGAACCTCAAAAGAAGCCTCCTCCTAAACGTACTTCCACAAAGGATCGCCATACCAAAGTAGAAGGCAGAGGGCGGAGGATCCGGATGCCTGCCCTGTGCGCAGCACGGGTCTTCCAACTAACAAGAGAACTGGGTCATAAATCAGATGGAGAAACCATAGAGTGGCTGCTCCAGCAAGCCGAGCCTGCTGTAATCGCTGCCACAGGAACCGGCACCATTCCTGCCAACTTTACATCACTGAATATTTCTTTGAGGTCTTCTGGCTCTTCTATTTCTGCTCCCAGCTACTTTAATCAGAGGCACGCTGCCCTTTTCCAGGCTGGCTGTGCCTCAACATCGCCTCCTCAAACTCTACTAAGCTTCCAGACCGGTTCCTTAGGGTTGGAAGGTTCTGAGAACGATCCTGCAAGCTTCCGGAAGAGACGGTGGGAGCAGGAGATTAGTTTACAGCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAACAGCAGCAACAAATGGCTGGGTACAGCCAGTTGCCGGGTGCGCTATGGATGATGGCGAACCCTAATAATAGCAGTAATAATAACAACCCTAATAGTAGTTTAGGGAATCAAGGAATGGGGGGTGAGTCCTCGAGTTCCATATGGGCTACATTTCCGCAGATGGGGTTTAGGGCGACGGCTGGGATTGGGTCTGTGACCAACACGGGGTTGCATTTTATGAATTTTCCGACACCCATGGCTTTGATGGCTGGTCAGCAGCTTGGGTTGGGGACTGGAGGTGGTGATGGGGGTAATTTGGGAATTATGGCCTCGAGGGCGATATGGGAATCTCAACAACAGCAACAACAACAGCAGCAGCAACAACAACATCAAGGAGGGAGTACTAGCGAGAGGCACGATACGATGAGCACGAGCGATGACTCGTAAGTTTGATCCACTTAATGAACAGTTCTACTACAAGCAAAAATGTATGCTTTAATTTGATGATCCCCTTCCACTTGGTATTATTCTTGATTTCATTTATTTCTTTATTTCTATATTCAAGTGGAAGATATTTTTTTTTGGTTTGTTTGTTTTTTATTTTTCTTTCTTTCTTTCTTTCTTTCATAGTTTGAGTGAGAGAGAACAATATTATTATTAGGGTTTCTTGGTGGTTTTGTTAGGTTTGTTTTTTTTTTTTTTTAAATTTTGTTATTGGGGAGATTGGTGAGCTTTTGATTTATCTATGAGAGCACTGATGTTTCAATTAGCAAGTTCTCCAATGTTTAATGTTTTCCTTCTTGATTTTTCTTTTGTATGTACATATAACATTGCAATGGCAAGCAACATTGATCTTAAATACTTGCTGAAGAAAATATTTCTGCCGTTATTTTGTTTGATTAGTATATGCTGCTGCTGTTGTTAAATGTGGTTTGGAGTTAAATTTAAAGTTAATAAATTGCTTAATGTAAAGATTTTTCTTCAGATAAAATCTATGTATTTTCATTTATTAAAGTTAAGTTTGTGAATTTTATTTATAAAACCTATGTATTTTCGTTTATTCAAGTTAAGTTTATGATTTTTTTTCTTCAGACAAAATCCATGTATTTTCATTTATGCAAGGTAGGTGTATGAATTTTCATCTTATTTTGTACATATTAGAATCCGGTTTTGTTTAAGAATGAACTTAATATTCACCTGTAGCTCTTATTTATATACATTACAATGTGACAGGCAATACAAGATTTGGATTCCAACAAACCTAAATTTTCTAATTTAATGTTTATCATTTGTCGGACAGTTCATTACCTTCATTTCACAAATATGAATCTATTAGTTCACAAAAATACATTATTATTATTATTCAGTCTTATGAAGTTGGTGGTCTTAGTGACCATTAACTGATGATAATGCTAAAGTTAAAATGCCTTGATTATTTTATTGGTGAACATTATGACCATAAAATTGATTTTTTTTATACATACACCAATTAGTTATTCCCGATACTCCTTTCAATATACGAACCAAGCCTTTATGATCTCGATGAACTTAATATAGATATTCTTTGTTCAAGATCATAATTTCGTAGTAAACCATTGGATGGTAGAACATAACTGATGTTTTGTGATCAACATAACAAGCACAAAGACTTCATATCTTTATCAGTCATGATATGGTTCTTCGAACTAACCCTTACTGGAATCGTGTAATTTGTTGTATTCGTGCATATATCTCACACTGGTGGTGCTAATTAAATATGTATTGATGAGTGTTGATCTCTTTGGCTAGTGAACAGTAGACACCTGTACATCTTTTTGTATGTGAGTGAGTCATGACAGAGAGATGTTGATATGAACAGTTCAATACCAGTAGATATGTACATATATGCTCATCTATACATACTTTAATTTGAAAGAGAAAATTAGATGGTCCATACAATATGAGCGTCCAGTGTCAACCGCAAGCTGAATATGTAGATAAAAACAACATAATTATATATAGATAATAATGTGTATAGATGTATATATGTAGACACATGAGTTGAACAGTGGGTCAACTCTATTTTTAGTCTGAAACTTGACACAAAGTACTGGACCAATTGTATATGTGTGCATGCTAGCTGGACCATACCATGGCCTGACTGTTTTAACATGCATATATACCCTCTATTTTATATCTATATGTTCCACATTGATATCAACTATGTATATACATATACATTTATTTCACATATAAAAGTTGTATATAGCCAATTGCATCACTCCCTATTCTTTCCTTTTTATTATATATCGTCATGGTTGGCAGGTTTTCTTATTACTTAATTTATTGATTATTTTGCATCAATGCACCTTTTTGTCAATTAATTTACTTTGATAACTTTACATGATTAGTTGAGATGTTTTTGTCTGTAAATATGGCTGAGTCAGATCATTCCTTGTAGCGTCGGAAATCAGGGCCAGCCCCAGGGTAAAACGAGCAAGCAAATTGCTTAGGGCAATCGCAGAAAGAGCAACTTTCCACTCCGGAGATTCAAATATACGAAAAGTTCTAAATAATTTAATCAAACGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009403173.1	4.8e-55	PREDICTED: transcription factor TCP15-like
Swissprot	Q93Z00.1	2.0e-37	Transcription factor TCP14
trEMBL	A0A804JCJ4	3.5e-55	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G47620.1	43.25	8e-44	174	AtTCP14;TCP14	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00794	AT3G47620.1	326	96	14	58	308	102	413	43.25	8e-44	174
AfisC4G00794	AT1G58100.1	207	76	7	70	250	57	255	46.86	3e-41	166
AfisC4G00794	AT1G35560.1	86	11	1	69	154	52	136	86.05	6e-38	155

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	71	223	142.8	1.1e-41

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009653	P	anatomical structure morphogenesis
GO:0007623	P	circadian rhythm
GO:0008283	P	cell proliferation
GO:0008361	P	regulation of cell size
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010029	P	regulation of seed germination
GO:0010229	P	inflorescence development
GO:0010252	P	auxin homeostasis
GO:0031347	P	regulation of defense response
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0048364	P	root development
GO:0048467	P	gynoecium development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16221	TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network