result

Gene information

Detail information of AfisC4G00809

Location

Gene	Chr	Start	End	Strand
AfisC4G00809	chr4	144625955	144627289	-

Sequences

CDS

Protein

Gene

>AfisC4G00809
TATACCCTTATTTTTATAGCCTGTTCTTCATTTTGAAGTCTATTTTACAGGAAATGCCTAATAATCAGAATGAATTGGTTCAGTCAGCTGATGCTAAGATCAGATTGAAATGGACTCGACAACTACATGAATGTTTTGTTAATGCAGTTTCACATCTTGGAGGACCAGACAGTGAGTTCTGATTTACATAACTTTGAAATCAGTTTATAAATATTTTAGTATATATAGTGTTCATACATTTCTGCGAATCGCAGAGGCCACTCCAAAAACAGTGTTGAGAGAAATGGCAATTCCTGGAATAACTCTCTACCATTTGAAAAGCCATTTGCAGGTATTATTATGTTTGTTTTGTGCTAAAATAGATTGATGAAACATCCATCTGAAGAGTTTGAATGTAGTTTTATTACTCTTATCTATACTGGCAGAAATATAGACTTGCTAAAGGAAGAAGTAAATTGGATAGCATGAATGAAGGTATGTGGGTAGATGTTTTCTTTCATTCTTTGTGTCTGTTTTCCTATGTTCATCCATATCTTCACTGAATCATATATCATTCATCAACAATTCGAACAGCAAAAACTGTGTTAAATTCGAGGGTTGAAGATAACCAAATCAAGCATCAAGACAGAAAGTAAGTTAACTAAACACTTTCTTGCTGATCAATCAATAATCATGTTTCAAATAATGAAGATCGATTGATGTTTGCAGTTCAAAGACAATGCAACAACTTCAAAGTGAAGTTCAAAGGAAGCTACAAGAACAGATTGAAGTAAGCCTCGAATTATTTTGCAACTTCAAACATTGTACATTTACTGTTTTACACCTTTTTACACCAGGTGCAAAAACACTTGCAACTAAGAATAGAAGCACAAGGCAAGTATTTGCAATCAGTTGTACTGAAAGCCCAGGAAACACTTGCAAGCTATAACCTGAATTTTTCTGAACTGGAAACAGCAAATACTGAAATTTCAGAACTAATCTCATCAGTATCTACTGAATCTCAAGTTACATCATTTGCGAAGCAATTACTGAATGCTGACTGTTCTGTAGACAGTTGCTTAACTTCTTCAAGTGAATCAAATGAAATCAGTCTGGGTTACAGTAAGAATATAAAAGAGTTTGACTTGAACAGATAGAAAACTAGAAGTTCATGAAAGTTAGAACTTGCAGTAATAAAAAGAAAAGGACCATGTTCCATAATATTGAGAATCATTGAGGTTAGTGAACATTGTCATGTTGTTTGTTGGAGTTTATGGGAATGGTATGTATTGTGGAGGCTAGCAGCAGATGTTTTTCTCAAACTTGGCATTTTATATAAGTATGATGTTTTGTTCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010937169.1	1.3e-39	myb family transcription factor PHL8 isoform X1
Swissprot	Q9SQQ9.1	3.3e-29	Protein PHR1-LIKE 9
trEMBL	A0A6I9S4U5	9.1e-40	myb family transcription factor PHL8 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G04030.3	48.13	3e-50	194	MYR2	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00809	AT3G04030.3	241	90	6	8	220	38	271	48.13	3e-50	194
AfisC4G00809	AT5G18240.4	220	85	3	8	199	38	257	48.64	1e-48	189
AfisC4G00809	AT5G18240.1	220	85	3	8	199	38	257	48.64	1e-48	189

Ortholog group

Species	Genes
Allium cepa	g539071.t1
Allium fistulosum	AfisC4G00809
Allium sativum	Asa4G00724.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	17	68	27.5	2.3e-06
PF14379.3	Myb_CC_LHEQLE	Family	107	147	56.6	1.4e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003913	F	DNA photolyase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009650	P	UV protection
GO:0010628	P	positive regulation of gene expression
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network