result

Gene information

Detail information of AfisC4G00860

Location

Gene	Chr	Start	End	Strand
AfisC4G00860	chr4	155603926	155606856	+

Sequences

CDS

Protein

Gene

>AfisC4G00860
ATGGCTAAAAACAAAATAGCTAACAGCAGTACTAACAACGAAAACAATATCACTAACACTAGTAATGCCAACATCAATAGCAATAATGGTAATAATGGTGTGAAGGTCAAGAGGAAGAGAAAAAGTGTGCCACGAGAATCACCATCGCAGCGTAGCTCGATCTATAGGGGAGTCACAAGGTATTAATTTGTAAATTTGTACACAAGTTTTATCAATTTTAATTCTTCACTTTATTTTCGAAATGTGATTTGATTTCTCTTCCTTTGGTTTTGTTTGAATGTTGATGTATAGACATAGGTGGACGGGGCGGTATGAGGCGCATTTGTGGGATAAGAATTGTTGGAATGAATCTCAAAACAAAAAAGGAAGACAAGGTTATATATATTTTTTATGTATTCTAAATTGATTTTAGCTTTGATTTTTTATTATTATTCACAATGATACATTTAATCTAATTCATTTCATTAACGATTTTTTTTTTCAATTTTTTTCCCTTTCTTCTTTGTTCATCATTTGGTGATGGATTGCACTCTATGCAGTTTATTTAGGTGAATACATTTTCTTTGTTAATTTTACTTTGATCTGTTTCTATTATAATTTGGTAATTAATATAAATTTGTATAACTGGAAATTAATATACAGGTGCATATGATGATGAAGAAGCTGCAGCACATGCTTATGATTTAGCTGCATTGAAGTATTGGGGCCATGAAACCATACTTAATTTTCCTGTAATACTAATTGCATTTCTATATTTTTTGTATGCAATATGTCTTTTTTTTTTGGCATTTATTGCATGGCAAACAATTAAATGTGTATGTGTTAATTAACGTCAGTTAAACACATACCAAGAGGAGCTAAATGAAATGGATGGGCAGTCCAAGGAAGAATACATCGGATCATTAAGGAGGTAATTTGGATTATTTTTTTTAAACTCAAAAGTTTTAATATAATTTAAAGTTCACGACCTCATTTTGATTGTAAATCATAAATTCATATTGCTTGTATATAACTTATATCGATTAAAAGTTATATTAATAAGTTTTACTATGATAATGCAGAAAGAGCAGTGGATTTTCAAGAGGAGTTTCCAAGTACAGAGGAGTAGCAAGGTATTTGATTTTAAATTTTGTTAGACAAATATAAGTTATACTAAACTAAATATGTTTTTCATTAAAAAAAAAGATACAAATTTTTCCTTCGTGATATGATTTCCGAAATTCCAGATCTCTAATAAAAATCTCATCTCCCTTTATTTTAGGTGCAGAGGTGACTGTTTCTCTAAGTTAATATTGAGAAATTATTATTAACTAATCAAATTAGATGTACCGTTCTTTGCAGTAATTATTAACTAAACAAATTACCGTTCTTTGCAGTAATTTTTAACTAATCAAATTAGATGTAACGTTCTTTGCAGTAATTATTAATTATTTTCATTACTTATTTTCCAGAAATAGACTAAATATATAATTAATGCATTCATTTGGAAACAAACAAATTCAAAGCATTCGGATTCATGTAAATCATATGCATACTGGTATCAAGATACAATGAAACTATTCGTTTATTTCTGTTGTACTGAAATTACTCACAATTACTTATGTAGTCAATTTCAGTGAAGCTGCATTGTATAATCCCATGGATATACAAATTATGAGGTTATATTTGATTAAAGTTTAATAAAATTCACAGACACCATCATAATGGAAGATGGGAAGCACGAATTGGCCGTGTCTTCGGCAACAAATATTTGTATCTCGGAACTTACGGTAAATTTCTATCTTATTTTTTCAAAAAAAGGAAAAAGAAGACTCAGTATTTAACTTTATTTTATTTAAGAAGAAAACTTGTACGTACTGTTCTCTTTTAACACGTACGCTTTTCGAATTGCACATAATTCATACATAAACAATGATAAAACTCTGGCAGTACCATTGTATATCAAATAATTAGTCACCTATACATAACTAACACATTTGACTAACGTGTACTTAGATAGGTTTAGTTGATGCATTTGTCAACTAAGATAAGGAAGCTCAATAACTTCACATTCTATTGATGGTTGAGTTATAAGTGTATATCCCCATACAAAGTCCATAATTGTTAGTTGGTAGTAGGAGACATTATTAGTTTTAAATCCCACCTACAATCCAACAGTTTTTTGTCACTCAAATTTTATGGTAACCTACTATTATCGGCTTTAAATTTATTTAATTTGCACCCCTTTTTGGAGGGGCAGCCAAATTAATATTCATTTTCTCTCATCCTATATGCCTTCCTCCTTACCTGTTAATGCTATTCATGCATGACATTATTGCTTGACCTTGTTGCTTGCAATAATAATATAACATATTATGACTTATTATTAAAGCAACTCAAGAAGAAGCGGCAACTGCATATGACATGGCAGCAATAGAGTATCGAGGACTGAACGCTGTAACCAATTTCGATCTAAGTCGATACATCAAATGGCTTCGACCAAACTCGGATAACAGCCAAAGCAACACTCAAACTAATAACACAATCATTGGTAACTCTTCACTGACGAACATCGTGCATGATCATGACTTAAACAGCAACAATAATAACAACAGTCAAACTCAGCGGAAACAAGAGAACACTGCAGATGTTTCATCTTCATCGACCATTACCCACTCTGGAAGTGGAAGTGGAAGTGCTACATCTGCTCTAAGTCTTCTGTTTCAGTCTCCCAAATTTAAAGAGATGCTGGAGCAGAGTTCTGCAATTAGTCACCCGTGTGACTCAATGGCTGAAGCTGAAAATAAGGCGTCGAAATGCAGCTTTCCTGATGATATTCAGACTTACTTTGGGTGCCATGATGGGATTGCTTATGCAGAAGGAGATGATGCTATTTTTGGGGACTTTACTACGTTTGCATCTCCGGTTATTCAGTTCGAATTCGATGAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010914036.1	4.5e-114	AP2-like ethylene-responsive transcription factor At1g79700
Swissprot	Q94AN4.1	6.0e-87	AP2-like ethylene-responsive transcription factor At1g16060
trEMBL	A0A6I9QVP6	3.3e-114	AP2-like ethylene-responsive transcription factor At1g79700

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G79700.2	56.05	3e-88	322	WRI4	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00860	AT1G79700.2	339	86	4	37	375	35	310	56.05	3e-88	322
AfisC4G00860	AT1G16060.1	337	109	5	34	368	38	336	55.79	7e-88	320
AfisC4G00860	AT1G79700.1	339	86	5	37	375	35	300	53.10	2e-79	292

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	53	116	36.5	3.9e-09
PF00847.17	AP2	Domain	158	209	45.5	6e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009873	P	ethylene-activated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019432	P	triglyceride biosynthetic process
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process
GO:1904278	P	positive regulation of wax biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network