result

Gene information

Detail information of AfisC4G00893

Location

Gene	Chr	Start	End	Strand
AfisC4G00893	chr4	161018665	161019776	-

Sequences

CDS

Protein

Gene

>AfisC4G00893
CTACTCGTTTTTGTAGCATTTTGTATAGCTATATATAACCTCATTGGATAATAACTGATTTAGTTCACCCTCATTTACACAAGCTACAGGCCAACACTGTAGCTTCTCTGTTTATAGTCCAACAGTGAAGGAAGTAGTTATGGAAGAAATTGAAATGGAGTATGCTAACTACTGGGAAACCAACCGGTTTTATCAAGAGCTAGATAGGTACATGTTTATTTATATTCGCTTCATCCAATTCATTTAATAATTATATCTCAAGCAACATGTACGAGCTGATGTTAGTTTGATTAAATATTTAGTTGGGGAATGGATGATGTCTTCTTAAGCTGTGAATCAAGCTCACCTGAAGGAACAACTGCCAACTCTTCTACTTCCAACATTAATGCAAGAAAGAATATAGAAACGGAGAGAAACAGGAGAAGAAAGCTCAATGCCAAACTCTATGCTCTTCGCAGTGTAGTTCCAAATATTACCAAGGTATACATGTTTTAACCTTAATTGTTACACATTGTGCATTGATAATTAGTTGATAGTGAAGTTGAATATATATTGTGGTTTGGGTTTAGATGGACAAGGCATCAATAATCAAGGATGCCATTGAATGCATTCAAGAAATGCAAGAACAAGAAAAGATGACTTTAGCGGAGATTAATGAGTTAGAATTTAGCAAGGCACAAAAGAAGCTAAGTTCCAGTGTTGGCAAAAGCAGTAGAATTATGAGTAGGATTGATGTTACTGAGGTATATATTAATTTTTTCCCAATGTTTGATTCATATTTTTAGTGATAAAATATCTGTAATATTTTCACAAAATCGACGGTGACGATGATTTCTCAATCTTTTTGTAGTTTTTTTTTTCCTTTTTTTTTCCTTCATTCTTTTTGAACAGAAGCAAATAAGTAATGAGATTTAGTTTGAATTTCGGTTAAAATGAGACCAGTTACATGTTTTATTTTATTTTTTAGTTTTACCAAGTGAAAATATGAAAATATATAGTGACAGATCATTGCATCGGAGAATGTAAGGAACAAAACTAAAATGTGATTTATCCTTGGCAATTTAAAATTTAACCAGGTGCAATCTGTTAACATTTGGTATTTGGTTTCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267843.1	9.6e-31	transcription factor bHLH35-like
Swissprot	Q700E3.1	2.9e-24	bHLH transcription factor bHLH027
trEMBL	A0A5P1EUS4	6.9e-31	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G29930.4	54.62	5e-30	126		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00893	AT4G29930.4	119	44	3	1	114	1	114	54.62	5e-30	126
AfisC4G00893	AT4G29930.2	119	44	3	1	114	1	114	54.62	1e-29	125
AfisC4G00893	AT4G29930.1	119	44	3	1	114	1	114	54.62	1e-29	125

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	54	100	37.0	2.3e-09

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0046983	F	protein dimerization activity
GO:0009718	P	anthocyanin-containing compound biosynthetic process
GO:0009753	P	response to jasmonic acid
GO:0010444	P	guard mother cell differentiation
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0050826	P	response to freezing
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016597	F	amino acid binding
GO:0034756	P	regulation of iron ion transport
GO:0043425	F	bHLH transcription factor binding
GO:0048657	P	anther wall tapetum cell differentiation
GO:0071281	P	cellular response to iron ion
GO:0071369	P	cellular response to ethylene stimulus
GO:0071732	P	cellular response to nitric oxide

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network