result

Gene information

Detail information of AfisC4G00986

Location

Gene	Chr	Start	End	Strand
AfisC4G00986	chr4	176669198	176671445	+

Sequences

CDS

>AfisC4G00986
ATGGGATTTTGTTGTTGTTTCAAGCGTAATAATATTGAGGAGAATAATGATAAATCAGATTTGAAAAAGAATGGCGAGGTTTCAAGGGAAGGCAATAATTTAGCCAATCTTGTGGATAACATCTCGCTTGAATCAAATAGTAACAAGCATCGAACGATAGCTGAAGAGATATTAAGGATTGGAAATGGAAATGGTAGCAGCAAGAACAAGGCTCGAGTTTTCAAATACAAAGAGCTGGTTGAAGCAACCGGAAATTTTAGATCTGAGAATCTAATAGGTGAAGGTGGATTTGGCAGAGTATATAAAGGGCACCTTAAAGATACAAAACAGGATGTCGCAGTTAAGCAACTGGATAAAAACGGATTACAAGGAAATAGAGAGTTTCTTGTAGAAGTATTGATGCTTAGTCTTCTTCATCATGAGCATCTTGTCAATTTGATCGGATACTGTGATGATGGCAGCAATAAACTTTTAGTTTACGAGTTCATGCAAAATGGTTCATTAGAGGATCATCTACTTGATCTGCCTAAGGGTAAAAAGCCATTAGACTGGGACACAAGAATGAAGATAGCGGTAGGCGCAGCAAAAGGTCTAGAGTATTTGCATGACACAGCAAATCCACCTGTTATCTATCGTGACTTTAAAGCTTCTAACATTCTTCTTGATCAGAATTTTAAGTCTAAATTGTCGGATTTTGGACTCGCTAAAATAGGGCCTAGTGGAGGTAAACAGCATGTATCAACACGGGTTATGGGCACATATGGATATTGTGCACCGGAGTATGCACTAACGGGTCAACTCACTACGATGTCGGATGTATACAGTTTTGGGGTTGTTTTCTTGGAGATTATTACTGGAAGAAGAGCCATTGATTCTTCTAGGCCTTCTAGCGAACAACAGCTTGTGCAGTGGGCAGAACCACGTTTTAAAGACAAGAAACGGTTCATAGAAATGGCTGATCCACTGTTAGAAGGAAACTTCCCAACAAAGGGTCTATATCAAGCACTTGCAGTTGCAGCAATGTGTTTACAAGAGGAAGGAAGCACACGGCCGCTCATTAGTGATGTTGTTACTGCACTGGAGTATTTATCTGTTCCGAAAAAGGACAACGTTGAACCAATTGAGAGGTTAAACCGTCCTGATTCATTGGCAGGGAAAGATGAAGGTTATAGAGATGAGGGGAGTTAA

Protein

Gene

>AfisC4G00986
ATGGGATTTTGTTGTTGTTTCAAGCGTAATAATATTGAGGAGAATAATGATAAATCAGATTTGAAAAAGAATGGCGAGGTTTCAAGGGAAGGCAATAATTTAGCCAATCTTGTGGATAACATCTCGCTTGAATCAAGTATGTCCAATTTACCTTCTTCTTTTTTTCCTGCAATTTGGACATTTTTTTTTCCAACATATTTAAAAGAAGGAATGCAGAATGGCAAGACAAACATTTGAAAATTAATTGTACAAATTTTATTTTTTGGAATATATAAGATTTAATTTATTTTTGTACCCTTGACTTTTAGAAGCAATTGTTAGTATGCCTGTATATATAATTTGATTTGAATCATTCTATGTTATACATGTAGAGAATTGTTTTCTTGTTTTAATTACGAAATCATGATGCTTTCACATATATCATGAATTGGTAGTTAGAACTTTGTACATATACAGATAGTAACAAGCATCGAACGATAGCTGAAGAGATATTAAGGATTGGAAATGGAAATGGTAGCAGCAAGAACAAGGCTCGAGTTTTCAAATACAAAGAGCTGGTTGAAGCAACCGGAAATTTTAGATCTGAGAATCTAATAGGTGAAGGTGGATTTGGCAGAGTATATAAAGGGCACCTTAAAGATACAAAACAGGTAATCATCAAATAGCTGGTAATTATACAGTTCTTTTTTGTATCAAAGGCTTACATTAACCTTTGCAGGATGTCGCAGTTAAGCAACTGGATAAAAACGGATTACAAGGAAATAGAGAGTTTCTTGTAGAAGTATTGATGCTTAGTCTTCTTCATCATGAGCATCTTGTCAATTTGATCGGATACTGTGATGATGGCAGCAATAAACTTTTAGTTTACGAGTTCATGCAAAATGGTTCATTAGAGGATCATCTACTTGGTAACACTTTGCAACTTTTGATAACATATACGCTATCTATATTATTTTATTTCACTACGAATAAAGCTTGCATATTAAAATTTGCAGATCTGCCTAAGGGTAAAAAGCCATTAGACTGGGACACAAGAATGAAGATAGCGGTAGGCGCAGCAAAAGGTCTAGAGTATTTGCATGACACAGCAAATCCACCTGTTATCTATCGTGACTTTAAAGCTTCTAACATTCTTCTTGATCAGAATTTTAAGTCTAAATTGTCGGATTTTGGACTCGCTAAAATAGGGCCTAGTGGAGGTAAACAGCATGTATCAACACGGGTTATGGGCACATATGGATATTGTGCACCGGAGTATGCACTAACGGGTCAACTCACTACGATGTCGGATGTATACAGTTTTGGGGTTGTTTTCTTGGAGATTATTACTGGAAGAAGAGCCATTGATTCTTCTAGGCCTTCTAGCGAACAACAGCTTGTGCAGTGGGTATGTCATATATTTATTCTAAATTTTATGTTTTAAGTTTTAAGTGCTAATGGTGAACAAGTGGGTATGTCATATATAAAAAGGTCGAGTTAAATAATAAAAACAAGTAGTTATAATTCTTTAAGTTAATGATCAGCAGCAGTAAGATGTTCGGTTGTGTATCAGAATTCTTAGGTTCAATACCTCAAGGCCATACATGATAGCACATTGATTCAAATGAATAGATGCTTCTTGAGATCAACTAATGTTTCTACTATAATTGCCGTATTCTATTTAACGTCTTCATTGAGAGTCGGAATAACACAAATCAAACAAAAAGTGTTATTGCTTCCATTGTCAAAAATAAGCTGTAGTGTTCATTTGGGTTGATTCAAACAAACAAAACATCAATGTATCAAGATTTATGATGATTTTATTGTGACTGTAAAGGAAGTAAATATCTTTCAGAAGACAGAAGAATATGTGTTTTGGAGTTCATAGATTCAACAAAAGCTATATCATCCAACTTAATCGATATATAACAACTTTTCTCATTAAGCAATAGATGTTAGAAATTGGTATTAAGAAGTGAGACATGATGTGCAGGCAGAACCACGTTTTAAAGACAAGAAACGGTTCATAGAAATGGCTGATCCACTGTTAGAAGGAAACTTCCCAACAAAGGGTCTATATCAAGCACTTGCAGTTGCAGCAATGTGTTTACAAGAGGAAGGAAGCACACGGCCGCTCATTAGTGATGTTGTTACTGCACTGGAGTATTTATCTGTTCCGAAAAAGGACAACGTTGAACCAATTGAGAGGTTAAACCGTCCTGATTCATTGGCAGGGAAAGATGAAGGTTATAGAGATGAGGGGAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269488.1	2.7e-157	probable serine/threonine-protein kinase PBL23
Swissprot	F4JEQ2.1	3.9e-137	PBS1-like protein 23
trEMBL	A0A5P1EIU4	1.9e-157	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20530.1	69.91	1e-143	506		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00986	AT3G20530.1	339	96	3	32	369	33	366	69.91	1e-143	506
AfisC4G00986	AT5G13160.1	385	136	3	1	379	1	379	61.56	2e-132	468
AfisC4G00986	AT3G07070.1	396	138	6	3	387	4	389	59.85	2e-130	462

Ortholog group

Species	Genes
Allium cepa	g23236.t1
Allium fistulosum	AfisC4G00986
Allium sativum	Asa4G00871.1
Arabidopsis thaliana	AT3G20530.1
Oryza sativa	LOC_Os05g41950.1; LOC_Os09g39930.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	87	356	157.0	5.3e-46

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0040007	P	growth
GO:0007166	P	cell surface receptor signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network