Detail information of AfisC4G01069
| Gene | Chr | Start | End | Strand |
|---|
| AfisC4G01069 | chr4 | 192764423 | 192769091 | - |
| Database | accession number | e-value | annotation |
|---|
| nr | XP_020242183.1 | 1.3e-51 | cell differentiation protein RCD1 homolog |
| Swissprot | Q6IP65.1 | 1.2e-33 | Cell differentiation protein RQCD1 homolog |
| trEMBL | A0A803LY40 | 2.8e-43 | CCR4-NOT transcription complex subunit 9 |
| TAIR id | % identity | e-value | bit
score | gene aliases | Short description |
|---|
| AT3G20800.1 | 37.97 | 2e-44 | 175 | | Cell differentiation, Rcd1-like protein |
>>>Show top 3 blast result 
| Query id | Subject id | alignment
length | mis
matches | gap openings | query
start | query
end | subject
start | subject
end | % identity | e-value | bit
score |
|---|
| AfisC4G01069 | AT3G20800.1 | 295 | 125 | 4 | 1 | 245 | 10 | 296 | 37.97 | 2e-44 | 175 |
| AfisC4G01069 | AT5G12980.1 | 265 | 106 | 3 | 31 | 245 | 35 | 292 | 38.49 | 3e-41 | 165 |
| AfisC4G01069 | AT2G32550.1 | 140 | 88 | 2 | 108 | 245 | 184 | 317 | 31.43 | 5e-12 | 68.2 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|
| PF04078.10 | Rcd1 | Family | 34 | 107 | 66.1 | 2.7e-18 |
| PF04078.10 | Rcd1 | Family | 103 | 246 | 130.0 | 8.5e-38 |
| Accession | Ontology | Name |
|---|
| GO:0000932 | C | cytoplasmic mRNA processing body
|
| GO:0016020 | C | membrane
|
| GO:0006355 | P | regulation of transcription, DNA-templated
|
| GO:0006402 | P | mRNA catabolic process
|
| GO:0019221 | P | cytokine-mediated signaling pathway
|
| GO:0019904 | F | protein domain specific binding
|
| GO:0030014 | C | CCR4-NOT complex
|
| GO:0033147 | P | negative regulation of intracellular estrogen receptor signaling pathway
|
| GO:0042803 | F | protein homodimerization activity
|
| GO:0044763 | P | single-organism cellular process
|
| GO:0048522 | P | positive regulation of cellular process
|
| GO:2000327 | P | positive regulation of ligand-dependent nuclear receptor transcription coactivator activity
|
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|
| K12606 | RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9 | EC:- | RNA degradation | ko03018 |