result

Gene information

Detail information of AfisC4G01195

Location

Gene	Chr	Start	End	Strand
AfisC4G01195	chr4	214686918	214689500	+

Sequences

CDS

Protein

Gene

>AfisC4G01195
GAGATTTGAGCATAGATTTAAGACTACGCCTTGGTCTATCATTTCTTCTCTACATAGTATAGACTACTTCAGATGCAAGGTACGATCATTATTATGGTATTTTGTTCAAAAGCTGTTTCTTTTTAAATTTGGTTTTGATTTTATGATTTAAGCTGTTTTTTCTACTGGGCTGATGGTTTACTTATGTTTTCTCTTGTGTAATTTTTTTCTTTGTGCCCATTATGAATATGAATATATGGAAATTTTGCTGGCTGATTCATAAAGGTTAAAATTCAGTGTTATTGTGGTTTTCTTATTTATATTTATCTTGGTTTTTTATCGTCCTTATGTACAAGTTCTTGAACAAATATACAATTTCATGATCTGACCCAATTTCCTTTAAATTGTAAGAGAATAATTATAACTGATTTGATATCTTTTTGGTGTAGATGTTAATATTCTGAGTTGTTACTTGCTGGCTTTATTTTCAGCTCCTTATCGTTCCTTCCTTTCTCTGTTATTCATTCAGTTGTTTCTATTTTTTTGTTATTCCATTAATTGTTGTTGATTGATTCATGCTGCTTAGGGAGTAAATGATTTATATTACATGTGCGTAATGTATATTTTGAGTCCCTTTAACGCAATCCAATACGATCAGCTGGGCTGCTACCTTTAAATCTATCATTTTGCGCATTATTTTCAGTAGTGTACCCTTATCCATCTATTGGTATATACTAGGTGAACTACTAGGCTGGTCCATTGGCTTGTTGAGCAATCATAAAAGGGCATAAAAAATTGAACAATGTTCAGATTCGTAAACAAATATACAATTTAATGTTAGGATCAAGTTGCTACTGTTAAGTTGAAAATTTGCTATGTTGAACTCCACTTGCTAAACTTCTATTGTTGTGTGGATTTGTTACTTGTTATTCAGTAATCTTCGTGTGATAAAAAATTTAGATTATTTAGGACGGTTCAGTTAACAAAAGCATCGGTTAACTTTTATCATAAACAATTGAACCATGGTTAACGTCGGTAGTTTTGAATGCTTAGGTTGTTATAGACCAACGTTCTAAAGTATTTTTAGAATCCAAACTTTATCAGTATTCACATACAACTGAAATTACTTTTCCTTGATGCATTGAAGGTTAAGAGTAATTAATTTTTTGTTTAATGAAAAACATCAATCCCATTAAACTTGATCAAGTACAGGTCTGGAATTTGAGTTGCTTAAACTCTGTCTAAAATAATTCACTCTAACCACTGGGGAATATCGTATTATCCCATTAAACTTTGATCCATGGTTGCATGACCACTGGAGAATATTGTATTCGGATTGTGTGGTGGAAATCAAGATGCTACATGAGTGTTGTACTCATTGGGATGTCATTGAACGCTTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAACCTGTGTCTCACTCTAATGAATATTTTTTTAATGTTTTAATAGAGTAATGGGAGGAGAAATTAGTAGTTCTCCAACTTCTTCAACTGACAGCAGTATTCACCCGTGTATTTCATCCACATGTGCACCTCAGGCAAAGAGCGATTTGAGCACAGATTTAAGGCTTGGCCTCAGTTTGTCAACCTCTTCTCTACATACTACTTCCTCGAGGTACGATTGTTTTTCATGGTATTCATAGTTCTACATATCTTTTCAAGTAAATCAATAAATTTTTGATTGCTTGTTCAATCAGGTTTATTTGCACTTTTTTGTCAATTTTTATATATGTTTTTTTTCATTTTTGACAGTAAATCTCAAACACTTTCTAACTGGCCACCGATAAAATCTCTGCTTAGAAGCACAATTGAAGAGAAGCGAACTGAAGGAAACCAAGAAACTTTCTATGTGAAAGTGTACATGGAAGGAATACCAATTGGAAGAAAAGTGGACCTATTTGCACATAATGACTATGATTCTCTTATCTCCACACTCTCTCTCATGTTCAGGACAACAATAATTTTGAGTAAGTAGTAAACTTCCTAACTCTAAGTTTTTAAAGTTGGAAATAATTACTTATGTTATAACACATAAACTACACTAATACATTGAAATTTAATGAGTCTTTTTTTCATCTATGAATCAGCACCTGAACATGCATCTTTGTCCTCGAGAAAAGTTCATTTATTAACGTATGAAGACAAGGATGGAGATTGGATGATGGTCGGAGACGTGGATTGGGAGTAAGTAGTGTATTGCCGTATATTGCTTAACTGATATTTCTTTATTATTTGACTTTAAAAGGATAATTCTTCATACTTGAACAGATTTTTCTTACGGAGTGTCAAAAGACTGATGATCAGATGGGCAGACAGATGCTAGTGTTGCACACACACTTTTTATTTTATTTTTGTTCATCCTGGATTTTATCCTTTGGAGCTTAGATGCATAGGGATATAAATGAGAAATGTTTATGTTCTCTTTTCCTACCTTTCTACTTACGAACTATATACACACATATATAGGTACCAAAAGAATAATAGTAATGATATTGTTGACAAATATTGTTTGCCATTTCGCTTTGTTTGATTGGGCTTTAATAAAAGAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255022.1	1.0e-52	auxin-responsive protein IAA4
Swissprot	A2WNM0.1	2.2e-31	Auxin-responsive protein IAA4
trEMBL	A0A5P1FPB2	7.4e-53	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G17600.1	47.79	4e-30	127	IAA31	indole-3-acetic acid inducible 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01195	AT3G17600.1	136	64	2	41	174	27	157	47.79	4e-30	127
AfisC4G01195	AT3G62100.1	138	71	1	32	169	30	166	47.83	6e-28	120
AfisC4G01195	AT2G46990.1	151	79	2	26	173	23	172	45.03	3e-26	114

Ortholog group

Species	Genes
Allium cepa	g257211.t1
Allium fistulosum	AfisC4G01195
Allium sativum	Asa4G01092.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	49	169	105.8	2.9e-30

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009630	P	gravitropism
GO:0009733	P	response to auxin
GO:0010102	P	lateral root morphogenesis
GO:0010262	P	somatic embryogenesis
GO:0010468	P	regulation of gene expression
GO:0044271	P	cellular nitrogen compound biosynthetic process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:2000112	P	regulation of cellular macromolecule biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14484	IAA; auxin-responsive protein IAA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network