result

Gene information

Detail information of AfisC4G01200

Location

Gene	Chr	Start	End	Strand
AfisC4G01200	chr4	215679712	215683539	+

Sequences

CDS

>AfisC4G01200
ATGTCAGAATCATCTGGGAATTCTCTTGAAGGACAACTATCCCAGAAAACTGATGTTTTTGGTCTTAAACTTTGGGTACTAATTGGAATTGCTGTTGGAGTTTTCATCTCATGCACATTTGTGATATTAATTCTATGTTTAACTCTACGCAATCGAAAGAGATCAAGAAGTTCATCATATCACCTCCCAATCACCCAAATTCCAAAAATATCAAAAGAAATCAAAGAAGTGAAAATGGATCAACATTTTGTTTCACAAAATGGGAACTTTCACTATACTCATGATGAAAAAGACTTGGAAAAGTTAGTAGGTATTTCCCAAAATGCAAATGATGATAGTAATTCAACCTCATTTAATTATGTGGAGAAAAAACGAAGCTCAATATCAACCGAAGAAGGGACTATTACAGTTTTTAGGCCATCTGTTTCTTATTCTGCAGAGATTCCTTCACCATTGACTGGCCTTCCGGAATTTTCTCATCTTGGTTGGGGTCATTGGTTTACTTTAAGAGATTTAGAGCTTGCCACTAACCAATTTTCGAAAGAAAATATTATAGGAGAGGGTGGTTATGGAGTTGTTTATCTTGGAAATCTCGTTAATGGGACTCCGGTCGCTGTTAAAAGGATACTGAATAACATGGGTCAAGCTGAAAAAGAGTTCAGGGTTGAAGTTGAAGCTATTGGTCATGTTCGTCACAAGAATCTTGTTCGGCTACTTGGTTACTGTGTTGAAGGCACTCAAAGGATTCTGGTATATGAGTATGTAAATAATGGAAATCTAGAACAGTGGCTTCATGGGGGTATGAGTCAACAAGGTTCTCTTACATGGGAAGCACGTATGAAGATTCTAATTGGCACCGCCAAGGCACTTGCTTATCTGCACGAGGCAATAGAACCAAAAGTTGTGCACAGAGATATCAAGTCAAGCAATATCTTGATTGATTATGACTTTGATGCCAAAGTATCTGATTTCGGTTTAGCCAAGCTGCTTGGTGCTGGAAAAAGTCATATAACGACACGAGTTATGGGGACATTTGGTTACGTGGCGCCAGAGTATGCCAACACAGGACTTTTGAATGAAAAGAGTGATGTTTATAGCTTTGGTGTTGTACTGCTTGAAGCAATTACTGGTAGAGATCCTGTAGATTATGGTCGACCTTCAAACGAGGTTAATTTAGTTGACTGGCTGAAGATGATGATAGGAAACAAAAGATCAGAAGAATTAGTAGATCCAAGCATAGAGAAGAGACCATCTACTCGGTCTCTCAAGCGAGCTCTACTTACAGCACTGAGGTGCGTCGATCCAGACTCAGAAAAAAGACCGAGGATGAGTCAGGTTGTGTGCATGCTGGAATCCGATGAAACAATACCACGTGAGGATCGAAGGCAAAGAAGATACCATTGTGGCGGCACAGAGACGGAAAACTCTGATACAGACAGAAGTGATAACCCTGATTCTAAAACCAATACCAGAAGATGCAGAACCCAATAA

Protein

Gene

>AfisC4G01200
GCATCTCTTGCTATCAACCACCTAACACTGAGAACTCCACCTCCCCTTCCTCATTTCATTTCAATATCATTCACCCATTTATTTATTGTTACCGCTATTAATAAAGCAAAACTGCCTCCATTTTCTAACATTTACCATTATTAATATTTCAAAATCCGATTCTGCACTACCAACCCTGTCATTCACTTTTTTTGCCTCATTTGGATACGAGTCCGTAGCTTCCATGCTTTCAATTTAGGACCCACTCTCTATTGGTGGGTGGTTTGCGAATTCATTGTTTTATAAGGAGAGGCAAAAGAGATGAGAGTTTGACAATTCGTCTTTGCTAGAATCAACTTATCATAGGTAAATTTAGTTCATCTTGTTCAAATGTAGCTTAATATCATTCTATTTGTTTCAACATGTATAGAATTTTTGTTCTTCGTGGTTGATTAATTTGGCCCTATTTTTGTGTTATAAGATGCAAGGTTTTAAATTGGACTTGTTCTTAATCTGTTGAAATTGTATTTTTGCTTACAATTATGTATATGTTTTTGCTGTATTTGTTCTGAATGATGATACAGAAGAGAAGTGTTATCTCTTTTCATTCTTCAAATTGTCGACTTGTGGTATACTCATGTTGTTTACATTTTAGAATGAGCAAAAATTAAAATTCTATTTGATAAGAAATTGTATCCCTTCCTATGATAGAATATATTATGCTTTGAGAATTGCAGTTCACAAAAAAATAATGTTGCCTATTAAATATTTGTGATCAGAGTAGAAGAATATGTCAGAATCATCTGGGAATTCTCTTGAAGGACAACTATCCCAGAAAACTGATGTTTTTGGTCTTAAACTTTGGGTACTAATTGGAATTGCTGTTGGAGTTTTCATCTCATGCACATTTGTGATATTAATTCTATGTTTAACTCTACGCAATCGAAAGAGATCAAGAAGTTCATCATATCACCTCCCAATCACCCAAATTCCAAAAATATCAAAAGAAATCAAAGAAGTGAAAATGGATCAACATTTTGTTTCACAAAATGGGAACTTTCACTATACTCATGATGAAAAAGACTTGGAAAAGTTAGTAGGTATTTCCCAAAATGCAAATGATGATAGTAATTCAACCTCATTTAATTATGTGGAGAAAAAACGAAGCTCAATATCAACCGAAGAAGGGACTATTACAGTTTTTAGGCCATCTGTTTCTTATTCTGCAGAGATTCCTTCACCATTGACTGGCCTTCCGGAATTTTCTCATCTTGGTTGGGGTCATTGGTTTACTTTAAGAGATTTAGAGCTTGCCACTAACCAATTTTCGAAAGAAAATATTATAGGAGAGGGTGGTTATGGAGTTGTTTATCTTGGAAATCTCGTTAATGGGACTCCGGTCGCTGTTAAAAGGATACTGAATAACATGTAAGATCTTTATGTGTTACTCAGCTACTTATAATGTTATTGTTTCTTTATATTAAGCTAGGTTCCAAAACTCCTGAAGAATGTCTTACATCTCTAACTTCTCATCTTAGTGTTTTTCTAGATGAGTAGCTTGTTGGGAGCTAAAATGAATCTTTATTCTGGTGTTAACTTTTACTGGATATTATATTATAGGGGTCAAGCTGAAAAAGAGTTCAGGGTTGAAGTTGAAGCTATTGGTCATGTTCGTCACAAGAATCTTGTTCGGCTACTTGGTTACTGTGTTGAAGGCACTCAAAGGTAAGCTTCCCATTTAAACTGTTGTCATTTGTCACAATAATATACTACAAAAATTCAACTTCTTGTGAGTGCAACTAGAGTAATAGGTATACTGCATTTGATTGATTTTGGATGTTCAGGATTCTGGTATATGAGTATGTAAATAATGGAAATCTAGAACAGTGGCTTCATGGGGGTATGAGTCAACAAGGTTCTCTTACATGGGAAGCACGTATGAAGATTCTAATTGGCACCGCCAAGGCGTAAGTAACATTTTTCTTTGATAATTAACTTTGATTTTTTTTAAACTTGAGGTAGTCTAATAGTTATCATTGAACAGACTTGCTTATCTGCACGAGGCAATAGAACCAAAAGTTGTGCACAGAGATATCAAGTCAAGCAATATCTTGATTGATTATGACTTTGATGCCAAAGTATCTGATTTCGGTTTAGCCAAGCTGCTTGGTGCTGGAAAAAGTCATATAACGACACGAGTTATGGGGACATTTGGGTATGCTCTAATACTCTGCTCACTTGCATCTAATTTGAGATCATGATTTTCATCACATTTATATTTTGCATTTTGTTTGTTTTCAGTTACGTGGCGCCAGAGTATGCCAACACAGGACTTTTGAATGAAAAGAGTGATGTTTATAGCTTTGGTGTTGTACTGCTTGAAGCAATTACTGGTAGAGATCCTGTAGATTATGGTCGACCTTCAAACGAGGTATGTACTTGAGCACATAAGTCAGTTGGCATATTAGTTAAATATAAACCTTTTAATGTAAATACTATTTTTATATTATGAAGAAAGATCATTCTTTCTGGAAAAAAATTGCTACTTTTCATAATACCTTATGAATAATTCTGTTTATTCATTTAAAGAAATAATGGCCTGTTTACAAAAAGATGTCTGTGTTATAAAAAGTGTCTTCTCCTAATAAAGTCATGTCATTACAAATGAAGAGTTCTGTAACAATTTGTAAAGTTGTATTTTTCAGTAAAAGTCATGTCCATTGGATACTGGAATGACTGTTCATCATCTACAAATAATTTGTAGTGTTATGGCGTTTAATCATCGTCTCAAGTTATAAAAGCATTGAACCTAATGTTAAAATTCTCCTGTCTATATACACAAATCAGTACAAGGAGGTTTACGCATGTATGTTGTGAACCTTGTCACTCTATACTCATCAGAAGTTGACAATTATTGTTTTACAGGTTAATTTAGTTGACTGGCTGAAGATGATGATAGGAAACAAAAGATCAGAAGAATTAGTAGATCCAAGCATAGAGAAGAGACCATCTACTCGGTCTCTCAAGCGAGCTCTACTTACAGCACTGAGGTGCGTCGATCCAGACTCAGAAAAAAGACCGAGGATGAGTCAGGTTGTGTGCATGCTGGAATCCGATGAAACAATACCACGTGAGGTATTATCTATGAATTTCAAGGCTTTCATGATTGCACCTAGATAGCTTGTCCTTTTTAGTTTCTTAAGTTCATGAGCTGTGTGATTCTATCTGTTAGCTCTTTATGTCATCTTATGAGACCTACCTGCATTAAAGTATAAATCAAACTATTCCTTGTAAAGTTGGCACAACATATCTCTACAAGTTAGATATTTCTCTTTATGAGAAGCTCGCATTGATTTGTGAAGCTATAATTTTCTTTTTCACAGCTTTCTTCACAACTATTTAATACGGGTGACTAAACACGCTTCAAAAGTACTTTATATTTAATTTACTTGGTGTATTTTCTTTTAGGATCGAAGGCAAAGAAGATACCATTGTGGCGGCACAGAGACGGAAAACTCTGATACAGACAGAAGTGATAACCCTGATTCTAAAACCAATACCAGAAGATGCAGAACCCAATAATTGAGATCCAATCCTTCCAATTCTAATTTCATCATATTTTGCAAGGCCATAACCACGGATGAAGATCAATGGCTTCAAGAACAACCAGTGTATATTGTTTGTTTAACAGGAAATTATTTCGAATGTGTGTTTAGAGTTTAAAAATCTCCATTTGTAGAGTGCAACTGAGTGTACAGGCTTTCAGATTTGGGATTATATTGTGAATGCTTCTATAGCTGTATTGTTCATTAAAAAGCTCTTTCAGATAGAGATTTGATTAACCACGGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241673.1	2.5e-197	probable receptor-like protein kinase At5g18500
Swissprot	Q8LEB6.1	2.9e-158	Probable receptor-like protein kinase At5g18500
trEMBL	A0A8B7D0B8	1.1e-197	probable receptor-like protein kinase At5g18500

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G56720.1	67.00	7e-180	627		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01200	AT1G56720.3	500	142	11	6	492	2	491	67.00	7e-180	627
AfisC4G01200	AT1G56720.2	500	142	11	6	492	2	491	67.00	7e-180	627
AfisC4G01200	AT1G56720.1	500	142	11	6	492	2	491	67.00	7e-180	627

Ortholog group

Species	Genes
Allium cepa	g93293.t1
Allium fistulosum	AfisC4G01200
Allium sativum	Asa4G01102.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	180	447	163.4	5.9e-48

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0006950	P	response to stress
GO:0007166	P	cell surface receptor signaling pathway
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0010068	P	protoderm histogenesis
GO:0019901	F	protein kinase binding
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048367	P	shoot system development
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network