Detail information of AfisC4G01208


Location
GeneChrStartEndStrand
AfisC4G01208chr4216218319216235219+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020254963.13.5e-277squamosa promoter-binding-like protein 1
SwissprotQ9SMX9.23.6e-194Squamosa promoter-binding-like protein 1
trEMBLA0A5P1FKZ92.5e-277SBP-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G60030.143.500.0 703SPL12squamosa promoter-binding protein-like 12

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag25103.t1
Allium fistulosumAfisC4G01208
Allium sativumAsa4G01108.1
Arabidopsis thalianaAT2G47070.1; AT3G60030.1
Oryza sativaLOC_Os01g18850.1; LOC_Os01g18850.2; LOC_Os01g18850.3; LOC_Os01g18850.4; LOC_Os03g61760.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03110.11SBPDomain104177100.34.7e-29

Gene Ontology
AccessionOntologyName
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0016020Cmembrane
GO:0003824Fcatalytic activity
GO:0005739Cmitochondrion
GO:0046872Fmetal ion binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0009941Cchloroplast envelope
GO:0010321Pregulation of vegetative phase change
GO:0044212Ftranscription regulatory region DNA binding
GO:0043565Fsequence-specific DNA binding
GO:0048510Pregulation of timing of transition from vegetative to reproductive phase
GO:0048653Panther development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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