result

Gene information

Detail information of AfisC4G01277

Location

Gene	Chr	Start	End	Strand
AfisC4G01277	chr4	228138098	228139331	+

Sequences

CDS

Protein

Gene

>AfisC4G01277
CCAGTGGCACAAAAGAAGCCTGTACGACATTACGAATTAGAAATGTTTTATTGTATTCATTGATTCCTTATATCCAAGACTACTTTGGATGATGTGTCCAATCGGATTACATACATAGCCGTAGTATAAAATACCTCACCGAAATGTTTGGAAGCTTCTTCCCTCTCGTTTCTTTTCTTGGTCTCCAATTCTTCGCTGTCAGTCACCAAACCCAAATTCGATATTTCAACCATTGGACGCCTATAAAATTCTCCCTTTGCCTTTTACCCTATCATCACATCAACGATTCAAATTCAAGACAGATTAATAAAAGCTGGTGAATTAATTAAAGTGAGCAATAATGTGTGGTGGTGCTATAATTTCCGATTTCATCCCATCCCGTCCTCGCGGATCCCTATCCGCTTCTTCTTTCTGGTCCGACTCCACTTCCTCTAATCAAAAGCCCAAAGGTAATTTCACTATTTTTGCGAATCGAGTAAAATCCATACTGAGTATTCTGTATTTGGATCAATTTCAGCAGCAGCGAGAAGAAAGGGAGAGCGAAAGAACCAGTACCGTGGAATAAGAAGGCGGCCATGGGGAAAATGGGCGGCTGAGATTCGCGACCCTCGGAAAGGAATTAGGGTTTGGCTAGGCACGTTCGCCACCGCCGAGGAAGCAGCACGTGCGTACGACAAAGAAGCCCGCCGTATCAGGGGTTGCAAAGCGAAGGTCAACTTTCCTAATGAAGACTTCCCTGCTCAGAGTGTGGAGAGGTTGCCCAAGGAGGTGAAGGTGGAGACCGAGGAGAGTCGTATTGAGGTGGCGATTAACTTGAGGGAGGAGCTGATGGCCTACGACAATTTTACCGATTTGTTTGGACTCCCGTTTGGTAATTACAGTGGGATTGAGACTGATGCTGGTGAAGTGAACGATGTTGCTGCTGAGGAGTCGGCTTCAGGGCTCTGGAACTTTGATGGTTTTTGATCATGCCTATTTGCTGTGATCTGATTTTGATTGTCCCTCTTGATTTTATTTTGTAAATATAGCTTTACTGTTTTTCTTTGCTTTTGGGGGATTTCGTTTTTGGATCTTCTTGGTTGTTATTCATTATATTACTTCAATTGATCGTCTTCTAACACTGATTAAGCTCTCAGATTTATTATGAGAGAAGTATATTATTTTATGATATGTGAAATTTTGGTTTTTGAGAGAAATGTTTACCACTCATCTTTAAAATATCTAAATAAACATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009386485.1	8.4e-37	PREDICTED: ethylene-responsive transcription factor ERF071-like
Swissprot	O22259.1	1.6e-29	Ethylene-responsive transcription factor ERF071
trEMBL	A0A8J5RN78	1.9e-38	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G47520.1	48.43	3e-33	138	AtERF71;ERF71;HRE2	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01277	AT2G47520.1	159	74	3	1	156	1	154	48.43	3e-33	138
AfisC4G01277	AT1G72360.3	132	40	2	1	107	1	132	50.76	1e-29	125
AfisC4G01277	AT1G72360.2	134	39	2	1	107	1	134	50.75	2e-29	125

Ortholog group

Species	Genes
Allium cepa	g386739.t1; g514018.t1
Allium fistulosum	AfisC4G01277
Allium sativum	Asa4G01176.1
Arabidopsis thaliana	AT2G47520.1
Oryza sativa	LOC_Os01g21120.1; LOC_Os07g47790.1; LOC_Os07g47790.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	49	97	43.9	1.9e-11

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0043565	F	sequence-specific DNA binding
GO:0051301	P	cell division
GO:0070483	P	detection of hypoxia
GO:0071456	P	cellular response to hypoxia
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network