result

Gene information

Detail information of AfisC4G01354


Location
GeneChrStartEndStrand
AfisC4G01354chr4247412423247451719-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020268254.10.0e+00LOW QUALITY PROTEIN: TATA-binding protein-associated factor BTAF1
SwissprotB5BT18.10.0e+00Protein ROOT GROWTH DEFECTIVE 3
trEMBLA0A6I9RJE10.0e+00TATA-binding protein-associated factor BTAF1 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G54280.159.930.02364ATBTAF1;BTAF1;CHA16;CHR16;RGD3DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases

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Ortholog group
SpeciesGenes
Allium cepag169808.t1
Allium fistulosumAfisC4G01354
Allium sativumAsa4G01260.1
Arabidopsis thalianaAT3G54280.1; AT3G54280.2
Oryza sativaLOC_Os02g06592.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF12054.5DUF3535Family7891246316.04.3e-94
PF00176.20SNF2_NFamily14821775205.86.7e-61
PF00271.28Helicase_CFamily1837193953.23e-14

Gene Ontology
AccessionOntologyName
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0000790Cnuclear chromatin
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001824Pblastocyst development
GO:0003007Pheart morphogenesis
GO:0003205Pcardiac chamber development
GO:0003682Fchromatin binding
GO:0032784Pregulation of DNA-templated transcription, elongation
GO:0003713Ftranscription coactivator activity
GO:0034728Pnucleosome organization
GO:0042393Fhistone binding
GO:0006915Papoptotic process
GO:0004386Fhelicase activity
GO:0035556Pintracellular signal transduction
GO:0005524FATP binding
GO:0005654Cnucleoplasm
GO:0031497Pchromatin assembly
GO:0006281PDNA repair
GO:0006338Pchromatin remodeling
GO:0006342Pchromatin silencing
GO:0006461Pprotein complex assembly
GO:0006979Presponse to oxidative stress
GO:0044772Pmitotic cell cycle phase transition
GO:0007420Pbrain development
GO:0008094FDNA-dependent ATPase activity
GO:0008134Ftranscription factor binding
GO:0008544Pepidermis development
GO:0009411Presponse to UV
GO:0009967Ppositive regulation of signal transduction
GO:0016569Pcovalent chromatin modification
GO:0019899Fenzyme binding
GO:0018193Ppeptidyl-amino acid modification
GO:0022008Pneurogenesis
GO:0030855Pepithelial cell differentiation
GO:0042127Pregulation of cell proliferation
GO:0042592Phomeostatic process
GO:0042790Ptranscription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:0043010Pcamera-type eye development
GO:0044702Psingle organism reproductive process
GO:0044710Psingle-organism metabolic process
GO:0045860Ppositive regulation of protein kinase activity
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0048468Pcell development
GO:0048514Pblood vessel morphogenesis
GO:0048589Pdevelopmental growth
GO:0048598Pembryonic morphogenesis
GO:0051098Pregulation of binding
GO:0051128Pregulation of cellular component organization
GO:0051704Pmulti-organism process
GO:0060840Partery development
GO:0065004Pprotein-DNA complex assembly
GO:0071310Pcellular response to organic substance
GO:0090544CBAF-type complex
GO:1901700Presponse to oxygen-containing compound
GO:1902185Ppositive regulation of shoot apical meristem development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15192BTAF1, MOT1; TATA-binding protein-associated factorEC:3.6.4.- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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