Detail information of AfisC4G01375


Location
GeneChrStartEndStrand
AfisC4G01375chr4253847671253872226-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020267308.14.5e-87squamosa promoter-binding-like protein 14 isoform X2
SwissprotA3C057.24.4e-55Squamosa promoter-binding-like protein 17
trEMBLA0A8B7BGI72.7e-70squamosa promoter-binding-like protein 14 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G57920.136.716e-43 171SPL15squamosa promoter binding protein-like 15

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag148920.t1
Allium fistulosumAfisC4G01375
Allium sativumAsa4G01266.1
Arabidopsis thaliana
Oryza sativaLOC_Os08g39890.1; LOC_Os09g31438.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03110.11SBPDomain79152111.02.1e-32

Gene Ontology
AccessionOntologyName
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0046872Fmetal ion binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0009908Pflower development
GO:0010321Pregulation of vegetative phase change
GO:0016043Pcellular component organization
GO:0044444Ccytoplasmic part

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.