result

Gene information

Detail information of AfisC4G01382

Location

Gene	Chr	Start	End	Strand
AfisC4G01382	chr4	256037101	256039879	-

Sequences

CDS

>AfisC4G01382
ATGGGGGATCCATATCACTCAAATTATTTCCTCAAAGGTATCTTCAATAATTTTTACCCTAGTTTTCAATCAAATGTTATCAATAATAATAACTATCAAACTCCTCCTCTTACCTATAACTACAACATGAACTCCCATTTCCAAACTTCTCCACCTTCACCTCCGTTAAGAGAAGCACTTCCTCTACTACGCACTTTAAGCCCAGCAAAAGATTTTCAAGGAAATAATAATGGAAATGATAAGGTGGGTTTATGTGAAAATGAAGAAGACGAAGATGGTGTAACAGTTGCTCTTCATATTGGATTACCAAACTCATCTTGTTATGCAGTTGATCTTATGTCTAGGGTTTCTGCTTCTGCAGCTACATCTTCAAATATTACTAATTATCAAGATGAAAATAGTACTGATGAAATTATAGAGAAAGATGAAGTTGTGCCTACTACTACAGTTGGAAGATTAAATAAAGGCCAATACTGGATCCCAACTCCTGCTCAAATTCTTATTGGTCCAACTCAATTTTCATGTCCTGTTTGTAGCAAAACATTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGCCCGGAATCACTAAGAGGAATACAGCCTACAGCAATGCTTCGGCTTCCATGCTACTGCTGCTCTCCTGGCTGCCGAAACAACATAGATCATCCAAGATCGAAGCCATTAAAGGACTTCAGAACTCTCCAAACTCACTACAAAAGGAAACATGGAATCAAACCTTTCATGTGCAGAAAGTGCGGTAAAGCATTTGCAGTTAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCACTTGTGGCTCCGACTTCAAGCATAAAAGGTCCCTTAAGGATCATATTAAAGCCTTCGGCCAAGGCCATTCCGCCTATGGCATTAACTGCTTTGATCATGATGATCATGATGACCCTTCTTCTGAGATTGAACAAGATTGTGATATCGCATCTCAGTGA

Protein

Gene

>AfisC4G01382
TATTATCCTCCTCTCTCTCCTCCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCCTACGTTCGGTGAATAATTTGCTCATTTTCCTTTTGCTGTTACTTTGTTTCTGGCTTATCAATTAGTTTCTCCGATAATGGGGGATCCATATCACTCAAATTATTTCCTCAAAGGTATCTTCAATAATTTTTACCCTAGTTTTCAATCAAATGTTATCAATAATAATAACTATCAAACTCCTCCTCTTACCTATAACTACAACATGAACTCCCATTTCCAAACTTCTCCACCTTCACCTCCGTTAAGAGAAGCACTTCCTCTACTACGCACTTTAAGCCCAGCAAAAGATTTTCAAGGAAATAATAATGGAAATGATAAGGTGGGTTTATGTGAAAATGAAGAAGACGAAGATGGTGTAACAGTTGCTCTTCATATTGGATTACCAAACTCATCTTGTTATGCAGTTGATCTTATGTCTAGGGTTTCTGCTTCTGCAGCTACATCTTCAAATATTACTAATTATCAAGATGAAAATAGTACTGATGAAATTATAGAGAAAGATGAAGTTGTGCCTACTACTACAGTTGGAAGATTAAATAAAGGCCAATACTGGATCCCAACTCCTGCTCAAATTCTTATTGGTCCAACTCAATTTTCATGTCCTGTTTGTAGCAAAACATTCAATAGATATAACAATATGCAGGTTCTTTTAAATTTTCATTTGTTTGCTTCAACTGATTTATTTTTGTTTGATTTAATTTGGTCTTGTATTTGTTTGATTAAATTCTTAGTTCTCTTTTTGGAAATTGTAACTGATTTGATGCATCCATGCTTTCCTCTTCATTTATTGTATAGCTTTTCTTTTTATTTCTTCTTTCACTTTAATTAAAATATAGGTTAAGAATTTTTCAAGCTAAATGTAAAATAAAATAACTCAAATTTTATCCCATAAAGACTCAGCCTACAATTAAGTTTTTTTTTTCTTTTTCTTTTACTATATATATTTTTTTTTTGAAAAATAACCTTATGAATATGTAAATTTTAATTTTGGATATGTAATTTATTTATTTTATCTGATTTAACCAAACAGTAAGAGTTTATGTACTTCGAATTCATTTTCAAGTATGGAGATTCAATTATTACTGTTAACTTTTCAGAAAATAGGTCTTTTTTAGTTGTATAAAAGGACCTTAAAATATGCACCTTTTCCTTTCATTAATATATCCTTGCCAATGCATTTATTCTTAATTAATTGTATTTGACTAATTTTCTTGGCAATACAAATGAGTCAAAAAAGAGAGCACTTAGAATTTCTAAATATCATAGAAATTACATTGATTCAGTTAATAAGAAATTAATTAGTAGATACCTGTACGTGATTGAACTGGACATAGGTAATGTTCCATACTTTATGGTATTCTGCTAGTTTGCGTTTGTATTATGTGCATTGACTGCTGTGAAAATAAAACAATTGTATTCCAAAAAGTTGTTTTTGTTTTCTGAATATTTCAGATGATCTTTAAAGTTCTTTTTTAAATGTTAATAATAAAGAAAAAGATAGATGGTCTCTCTGCAATCACTGCACTAAAACCCAAAATCACTTGTCCACTTGACAATTTCATGTGTACAATCTTCTCTTTCCCACCTCTCACAGCCTTCTAACTTCTTCTTTATTATCAATTCTCTCTCTTTTATTTTCATAGGATCAATCCTTTTGCTTTGAAGTTTGTCATATTAATCAAGTTTAAAAAAAAAATACAATATAATATTACCATGTTGATCATATGCTACTACCAAAAAAGCTTACTTGGCTGTTTCATTGATTTTTTTACAGAATCTTTGATTATTTATTTATTTTTTTCCTTTTTTTTTTGTGATTTATACCAAGCAGAATTGAGTTTACTTAATTATTACTTAGTAAGCATCTTGTAAAAGTTAACTATCAAAATGAATTCATCTAGTAATTCTATCCCACTATCACCAACCCTAACATATCAAAGTTCTATTAACTTATATATTTAATGTCTAATCTTTAAAAATTTGTGGTGTGTAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGCCCGGAATCACTAAGAGGAATACAGCCTACAGCAATGCTTCGGCTTCCATGCTACTGCTGCTCTCCTGGCTGCCGAAACAACATAGATCATCCAAGATCGAAGCCATTAAAGGACTTCAGAACTCTCCAAACTCACTACAAAAGGAAACATGGAATCAAACCTTTCATGTGCAGAAAGTGCGGTAAAGCATTTGCAGTTAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGCACTTGTGGCTCCGACTTCAAGCATAAAAGGTCCCTTAAGGATCATATTAAAGCCTTCGGCCAAGGCCATTCCGCCTATGGCATTAACTGCTTTGATCATGATGATCATGATGACCCTTCTTCTGAGATTGAACAAGATTGTGATATCGCATCTCAGTGATATCTCTCTACTTGTATGCATTATCTAGGCAGCTACTTAATATGTCTACTCATAGTTCAATCATGATGATCCATGTAAGGGGAGGAAATGTTGAAAGCAGTTGGATGTGAGTTCATTTTGGCTTATATCTACCTATATTTATATAATTATAATGTGTAATCAAACTTTATCGCTATGTGTATGAAATCTTTTTGGTTAACTTATCTTTTTATAGTGTTGTTTCAAATTTTGTTAATGCATATATATAGTAAGATGATGAATGAACTGACGAAGGATGCAAAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008795700.1	1.6e-118	zinc finger protein WIP2-like
Swissprot	Q9SVY1.1	3.8e-101	WIP-domain protein 2
trEMBL	A0A8B7CBB8	1.1e-118	zinc finger protein WIP2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G57670.1	71.15	6e-102	367	NTT;WIP2	C2H2-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01382	AT3G57670.1	253	55	3	94	330	122	372	71.15	6e-102	367
AfisC4G01382	AT1G51220.1	341	129	9	1	330	1	337	57.77	2e-99	359
AfisC4G01382	AT3G20880.1	339	117	9	17	330	85	410	54.28	5e-94	341

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0003676	F	nucleic acid binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006997	P	nucleus organization
GO:0008270	F	zinc ion binding
GO:0009813	P	flavonoid biosynthetic process
GO:0009860	P	pollen tube growth
GO:0010087	P	phloem or xylem histogenesis
GO:0010305	P	leaf vascular tissue pattern formation
GO:0010500	P	transmitting tissue development
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0031965	C	nuclear membrane
GO:0048364	P	root development
GO:1990058	P	fruit replum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network