result

Gene information

Detail information of AfisC4G01620

Location

Gene	Chr	Start	End	Strand
AfisC4G01620	chr4	300526338	300528308	-

Sequences

CDS

Protein

Gene

>AfisC4G01620
ATTTAGTAATTTATTTGTAGTTCCAGCTCTTCTAAAATCTGTCGCATCTAAACTGGTCTCATCAAACTATCCTGACATAATTTCTTAATCCTTGTTGGCTTAAATAAATAATGATAAAAATCATATATTTATTGATTTAAATAAAAGGTTAATAATTTTGACAAATTCATTATATTTTTTTGGACAAATATTATTTCCTGAGAAATTCAAATATTATTACAAATAAATCAATATTTCCGAGAAATTCAAATATCTTTAAAAAATATCAAATATTTCAAATAGTTTTTGAAGAAAAATTTCAAGTTTTAGTAGGAAGTTATTTTTCTTGAAAATACATTTTTTTCCAAAGAATTTAATAACCTTTCAAAAAGATTTAAAAAATCTCAAATAAACCTCTGCTGAGAATTACAATTTTTACGTTTTTAATGCAATTGACTGAATAGTGTAAAAAAATCTGTCCATCGGTTTCTACTGTCGCATGGTAGTACTAGTAGTCAAAAATTTGGTCTTTGTTAACAGCTTGTTTTATGTGGTTACATAGGGAACATATGCATATCAATAGGAAGAAGTTACCACGCACAGTTTCAATAACTTATCAATAACTTTGGATTTGAGGATCCTTTTGCTGTAACATTGCTCATTAAGTTTTTTTTTTGCTTACCATGAGTATTGCAATTTTCTACTTCACAGCTGCACAATTGGTAGGTCACACTGATGATCAGTGCTTGCATAGATGGAAGAAGGTTTTAAATCCTGAACTAGTTAAAGGAGCTTGGTTTAAAGAGGTATATAGATTTTCCCATATTTTAATATGATTTTGCATGAAAGAATAGGCGTATTAATTAAAATATGACTGCATGACGTACATTGGTAATATGTTACGTTTCTTTGTTATAATGTGTTTTGTTTCATTTACTATTCAGGAAGATGAAGCTCTTATTGCAATGGTAAATAAATTTGGACCAGAGAAGTGGTCAAAAATTGCAAAACATTTGCCAGGACGCATTGGGAAACAATGTCGAGAGAGGTAGCACCATTCATCTAAACTTAACGTTGTTTGCTAAGCTTGTTTTTTTTACTTTTTACTGATACATACAGAACTTCAATTCTTACTACATACAAATGCCTCCTTACCTATGAGTAATCATCTTTTATAATTTCGAGTTCCTTTTGAGCTACCACTACGGGATATTGTCCTACATGTCAAGGAATTAATATGATGAAAACCAGGTATAACTATAAGGACTATTGGTAGATTCTAAATTTAATCATCACTCAATTTTATTGGGAATATCTTTTGGTTTCAAGTGGGCAGAAATAGCCAAGTTACTACCTGGAAGGTTAGAATTTACAATATAACACTGTGATTGCTTTTGTAGAACTGAGGAAAACCATGTTAAGCCTGTAAAATCATAGGGAGATGTGTTAAAAGCCCCAAATTTCAGGAAACCAACAAAAAGGTTAATGTTGTCATTAAGCTTTGAAGAACCTGTCATCTAATTCACATCTTGGTTTTCTGATATATGGGCCGACTTTTGGGAAAATCAATCAAACAATCAATCAACATATCAATGAAAACTCTAAGATGAAGTACGGTTTACGTGCGGGGGGACTAGTGAGTTTTCGGTAAAAGTAAGATTACATCAAAGATCGACTCTAAGTCCATATCTACCTGATTGGTCCGGGCTAAAAAAATGAAGGAAAAAAAGGGAAAAAATAATCAAAAGGATGTATCAAGGTATATGATGTTTGCATATGATATTATTCTAGTTATTACCTCAAAATAAAAAAAAGAACAAAAGTTAGAAAAATGAGGAAATACATTAGAGTCAAAAGGGTTAAAAAACCCATTAGAATCAAACTGAGTATGTGGCATGCAAGTTCAGTAAGGAAACTAGAGTTAACAATACAATTAAGGTAGAAGAGCAGATGATTAACAAGAAAGATAGTTTGAATATCTTGGTTTAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	KAF1865485.1	5.5e-23	hypothetical protein Lal_00004861
Swissprot	Q9S7G7.1	1.8e-23	Plant c-MYB-like protein 1
trEMBL	A0A6A4NEA6	4.0e-23	Putative transcription factor MYB-HB-like family

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32730.2	70.59	2e-25	110	ATMYB3R-1;ATMYB3R1;MYB3R-1;MYB3R1;PC-MYB1	Homeodomain-like protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01620	AT4G32730.2	68	19	1	17	84	69	135	70.59	2e-25	110
AfisC4G01620	AT4G32730.2	59	34	1	10	68	114	171	40.68	1e-06	48.5
AfisC4G01620	AT4G32730.1	68	19	1	17	84	69	135	70.59	3e-25	109

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	35	76	53.6	1.7e-14

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003713	F	transcription coactivator activity
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0016363	C	nuclear matrix
GO:0031523	C	Myb complex
GO:0032465	P	regulation of cytokinesis
GO:0032875	P	regulation of DNA endoreduplication
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0090307	P	mitotic spindle assembly

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network