Gene information

Detail information of AfisC4G01732

Location

Gene	Chr	Start	End	Strand
AfisC4G01732	chr4	323471836	323472291	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	PIA48691.1	1.9e-40	hypothetical protein AQUCO_01400928v1
Swissprot	Q0JIC2.1	2.1e-41	OsGAMyb
trEMBL	A0A2G5DYU9	1.3e-40	Transcription factor GAMYB-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G11440.1	61.48	2e-38	153	ATMYB65;MYB65	myb domain protein 65

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01732	AT3G11440.1	122	44	1	1	119	1	122	61.48	2e-38	153
AfisC4G01732	AT5G06100.1	120	39	2	1	120	1	114	62.50	4e-38	152
AfisC4G01732	AT5G06100.3	122	41	2	1	122	1	116	61.48	4e-38	152

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	40	87	48.0	8.9e-13
PF00249.28	Myb_DNA-binding	Domain	93	121	30.1	3.6e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009416	P	response to light stimulus
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009860	P	pollen tube growth
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042335	P	cuticle development
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045926	P	negative regulation of growth
GO:0048235	P	pollen sperm cell differentiation
GO:0080086	P	stamen filament development
GO:0080091	P	regulation of raffinose metabolic process
GO:0090406	C	pollen tube
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network