result

Gene information

Detail information of AfisC4G01749

Location

Gene	Chr	Start	End	Strand
AfisC4G01749	chr4	327216295	327220871	-

Sequences

CDS

Protein

Gene

>AfisC4G01749
AAAAAAGCAAGCACAAAACATGTCTGCCTCAAAGGCAAAAATATGCTTTGATAATGGTGCATGTGTCACAGAAATGCCGCAGAGCTCTATACTTGCGTGAGTGGTGCTCTTAAATTCCATTTCTGGACATTTTTTCTGCTTTGGAATCTCTAACCTCTTCTCTGTTCCTGTTCCCCTTTTTACTACAAAGTGAAGAAAGCATATCAGCCTTTTTTTTTCCATCTTTCTTTTTACTTTCTTTTTATATTTTTCTTTTCCCTCTTAATCAAGAGTTCATTTTGAGTGTTCTGGGTTGTTGGCACTCCTCTTTTCCATATGGCTTCTTATGTTCCTGAATTTTAAGTGCTTCTGCTTTGATCTTTTTTTCCTTTTGTTTTCAAAATATAACCAAAGGTGAGTTCTTTTTTACATTTTTTAACTTCATTTTCCGCGTAATATTCACTGATCGCTTAGTAATTGTGCTATTTAGTGTAGCAAAATGGAAGAAGAGGTTCCCAAGTTGCTTAATTTGATACCAGAAGATACTAAAAAATGGCTTGTGAGGGGTTGTGGAAGTGGGTTTGAAGCTCAAGTCGAGAAGAAGCTTGAGTTAAAATTGGGCCCGCCTAGAGCTGAAGACTGGGAGTCAAATGATTATTTTCCCAATGCTTGTAAAAAAGTTACTAAACGGGGATCGTTAGATACTAAAAATGAAGGTTATTTTCAATATTGCTAAAGTTTTATGCATGATTTCTGATTATACTTATGTGGTTTATGTGTTGATGCAGCTAGAAACAATGCTAATGATAACAACTCGGAAGCTAGGTAAAAAAATTAAAAGCTTCTTTCCCTTTTACGTTATAACGTATTATGTTTATGGATTCCGCAGTTCCTATTTTGCAATAGCCTGTTGGTGCAAGTATATTTGAATATCTTTATTTTTCTTGCATTTATTCTGTACTGTTGATTGGTTGTTTTAGATATGTTTGTTTTATGTCAAGTTGGTGTTTTCTTTGTTTTGTCACTCTGAATTGGCCATTTCTAAATTCATATCAAGCATTTATTCTGTTTGGTGTATTGTTTTGTATATTTGCATAGTTTTGGGCTATAAGGCATAGGGTTGAGAATTTGTATGCCTATATTTTGTAGTGTTTACGAAATATGTAAGAAACTGAGTAAGCATTTATTTCTCAGATTTATTGTTTGGCGTGTAGCTCTTATTTCATTTATTCACAAGGTGAATATGTATGTAGCTTTATGTGTGTACATACAGACGTACATATATTTGGTAATGGTGGGGTCTTTTGTTGCATCGGTTAGAGGTTTTAGATTGGAATACCTGTAGTATATGATATTTATCAATTTTCAAATAAGGCCAAGATTAATGGCACCCCTCTTTTATGGCACCTCATTCGCACATATTCATAAATTTGTGTATGCCATCTGAATTGCTACAAAATTCTGTAAATCTTTATTTACATTATGAATTTTATTTATTCCCGAAAAATGATACTATTTTAGAACATATAGCCCCTTCAAAGTTACAAGTTTGTAGTGTTAACTGTTAAAACATGTGTTTTGATCATTAATGTGAAATATCAATTTCATAGCGGTAGATATGTTAAAATGCATCCAAATTTTATATGCATATGTACCTTAAAATGTATATGCATGTGATGTACATAATACATGAAAACATAAACTGACAATTGCCTCTTCATATATATATATATATATATATATATATATATATATATATATATATGCATGCCTTTGTTTTCTGTTTTCAAACATGAGATTATTACCAATATGCCTTCATGTGTGTGGCATATTTAGCTGATCACACATGATTTTTTTTAATTGATTTCATTATATACGTGTAGTAATTAGCGTTACAGGCTTTTATTGAGTTTTAGCTCTAATATTATATTAGAGAACCAGTAATTTGATGACACAAAATCATATTTTTAGTGGAATTACATCCACTTCTTGGTGCATAACCCGAGCAGGGGCTCACTCATATTTTAAACCACTAGATCAAACCTCTAATGATTCAAAACACCAGTGCATTTTAACAATGATCAATGTATGTTGAAATTCACCATTGTTCTGAGTCATTGTTAGACCTTTGATCTAATGAACTTCAACAGTTGGTTGAACGCTGGTCTGGTTATTCACAAGATGTGCGACCTTTCTAATGAAGTACATCATTGCAAACATGTTTAGATAAATTGGTGTAGACTTTAATAATTCAATGAACAAAACCCAAGGTTTAAGCCTTTGTTGTTTGTTACAAACTCAGAACAGTAAACTTAAACAATTCATCCGCATGCTTTTTAAAACTTTTTTTTTGTTTCGAGATCATGAGTACAGTTTTTGTTCCATTAGATATTGCAATATCTTTGTCCTAACTTAGCATTTGTCAATAACTGCTTCAATTTCACATTCTTGTGCATTAATGTACATAATCCATATCCATGTTTCTACATCAATCTTTAATTATTTCTCCAGATTGCAAGAAAACCAAAAATTTCTTTCACTGCTAATTGAGTGGTATATCTTTGAGGTTTGCTAAGCAATATAATTAAGTCATGGAAGAGCAACTGTTGCTTGTACTTGTGCATTGATTGGCTATTTCAATATTCTGAGCCAATCAATGTTCAACTGCAATGTACAGTGGCTCTTGCGCTGCTGTACTTAGTAAGGCTGTATATCTTTTAGTGTAGGGAACATGCCAAATAATTTTTTTTAATCTCATCTTGTAAAATTTGTCTCTTAGAGAGTGCAAAAATACATCAGTTCCAGTAGTTGGCTGGCCTCCTGTTCGATCTTTTCGCAAGAACATTGCAAATAGCATTTCCAAACCTCCCATTTCATCTGAAAATTCAAATAAGCCAGAAGCCAACAAGAAAGGACTTTTCGTAAAAATCAACATGGATGGTATCCCAATAGGCAGAAAAGTGGACCTCAAAGCTTACAATAGCTATGAAGACCTCTCTTATGTTGTAGAAGAATTATTTAAAGGCCTTCTGGCTGGTAAATATTATATCTTTATTGTGGTTTTATGAATTACACCAAGATTTTGTCATAATTTAAATTTATTTTTTGCCGTATATACAGCTCAAAAAGATCCGAACAAAGCTGAAGCTCAAAATTCTGCAGAAGTGAATCAGGCTTTTAGAGGATTATTAGATGGAAGTGGTGAATATACCTTGGTTTATGAAGATAGTGAAGGAGATAGAATGCTAGTTGGCGACATTCCTTGGGAGTATGTTTTTTTAGTCTTCATATTAGCTTGATAAGTATTCATATTGTTGAAATGTCACGAAGTGCATGCATTTGGAACTTTAAGAAGTCAATGAAGTCATATTGATTAGTTTGAAGTGTAGAATAAACTAGTATTATCAGAGTATGACATAAACCTTGATGGATTTAAGGATATAAAATTAGTATCAATTTTCGTTTCTACTTGTTCATAAGTTGACTATAGGAACTAATGTGACTAGGTAGCTTGCTTCTAGTTGGACTAACATGCTCATCTTACTCGATTTGGACTATTTGCTCTTACAAAAAAACACAAATTGAGAAACTTTCTCAATTCTAAACCATAATATCTGGTAGGATGGTCCAGATTTAAGGTTGATTTTTTGGATGTTCATTAATCTTGATTCAATTTTGTCAAAGGGTGGATCAAAGTCCCTTCATGATTCTATTAATTCTAGAAAGTGGAACTCATGTAGGGTGCACGCGTGCACTTCACTTGGTATTTGGTTGCTCAACAAATGAAGAATAAATTATTTTGAAAACGCTATTGACTTATTGACAAATGAACATTGATTTGATGGTTGCTAGTGACCAAGATAATCATGTATAATGATATATTTTAAGAATTGGTAACCTTCGTCAAACTTTTAAAATTACTCTTTGTTCAACTTTTTTGAGAATTAGCATGCCCAAAAAATGTTCATTGTCAGCTTGCAATTGTCAAAATGTTACGATGTCTCAAGAGTAAGACTATACAATCCATTACTGTCATATGTGTAAACATTATTTAAATTTATCATATATATGTTAATGCAGAATGTTTGTTTCTACCGCTAAGAGATTGAGGGTGCTGAAGAGTTCTGATCTTTCAACACTAACCGTAAGTTAAAAAAGTATGTAAATAATAAATATACATTATATGTTGTTTTCACACTGTTTTTTGCTTAACTTTTTGTTAGTTGGGAGCAACCAGTCGGAAAAGAACAGCAACTGATTGCTGAGTTTGATTAAAGAACTGATTTCAAGGTTCAGTATTTGATCAATTTTTTGTTGTTCTCTATGATTGAAGACGACGTATTTCCTGACCGAAAGCAAAATGATTTGCAGAATAGTAGAAACTATACATGTATTTGGCAAAGTTAATTTTATGAACTTGTAATTTTGTTCTGTTTTATATGTTATTCAAGATTAGATTGCTTATGTATTTATTCCCTTTGGTAACGTTTATTCAATATGCAAGAGTTTATTAGTTTTTGTTTCTTTTTGTTTATTTTTTAGAAATAAGCATGCATCGGCGCATGCGATAGCATCTAAGCATACAATCTATGTACCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271865.1	7.4e-68	auxin-responsive protein IAA6-like
Swissprot	Q8LAL2.2	2.3e-50	Phytochrome-associated protein 1
trEMBL	A0A5P1FQZ2	5.3e-68	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G16500.1	44.96	2e-53	206	IAA26;PAP1	phytochrome-associated protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01749	AT3G16500.1	278	96	10	6	249	12	266	44.96	2e-53	206
AfisC4G01749	AT1G51950.1	257	101	10	6	243	12	258	49.42	4e-51	197
AfisC4G01749	AT5G25890.1	209	79	5	33	241	4	168	41.15	6e-33	137

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	59	240	228.8	7.8e-68

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003993	F	acid phosphatase activity
GO:0005634	C	nucleus
GO:0005740	C	mitochondrial envelope
GO:0005768	C	endosome
GO:0005802	C	trans-Golgi network
GO:0006109	P	regulation of carbohydrate metabolic process
GO:0006417	P	regulation of translation
GO:0046983	F	protein dimerization activity
GO:0009506	C	plasmodesma
GO:0009733	P	response to auxin
GO:0009941	C	chloroplast envelope
GO:0010311	P	lateral root formation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030943	F	mitochondrion targeting sequence binding
GO:0045040	P	protein import into mitochondrial outer membrane
GO:0080167	P	response to karrikin
GO:1901332	P	negative regulation of lateral root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14484	IAA; auxin-responsive protein IAA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network