result

Gene information

Detail information of AfisC4G01787

Location

Gene	Chr	Start	End	Strand
AfisC4G01787	chr4	340031206	340033384	-

Sequences

CDS

Protein

Gene

>AfisC4G01787
CCAACTTAAATCTCACATAGTCTCTTGTATAAATTGGCAGTTGCTTCTCCCCACTCTCCATACAAACAACTCAACCAAACATCTCTAGTCCCAATTATAACTATAATGCAATAAATTCTCCTAAATTCAAGTTCAAATTCAAGTTCAAACAAGGAAACAAAAAAGCAAAAAAAGCATGGAGATGGAGAAGAAGACAATGGTGCAAAAACTGATTCAGGGGAAAGAGCTTGCGAAACAGCTTCAAGCAGAATTTTTAAACCCACAATCATCACTTGAGTTGCGCAAGTCATTAGTAGAAGAGATACTTGCAACTTTTGAAAAAACCATCTCCATGGCTAATGTCAACAACTCTACGTCGCCTCTATCAATTCTTGATAGCCCACAGAGCCAATATTCGCAGCAGCCGTTCTTGAGAACTGGCAACGAATCTGTATCAAAGAAGAGGTATACACACACATACTTCTTCTAGTTTCTTATTCTTTAAAACTTCTATTCATTTGCAAGAAGATTTAAGCCATTTGAATTAAGTTTGAGTTTATTTTTTCTTCTTCTTCTGTTTAACTTTGGACTTTGATAATAGTTGCTGAATTTACAACTGTGTGCAGAAAGCCACAGCAAAAATGTGGAAATATAGTGAAGCTGGGAACAGGACCGGAAGCTCAAGGTCCATTGGAAGATGGACATAGTTGGAGAAAATATGGACAAAAAGAAATTCTTGGAGCAAAACATCAAAGGTTTGCATTTTTATTTTTTAATTTCAGTGTCCTTTTCTGTTTATATTCAATCTATGTTTAGGAAAAAAAAACTATGAATGGAAAAGGAAAGGCACAAACTTTTATTGGATATTATATGTCATAAAGTGAAAAAATAATTATTAGTTTGGCTCTATGTATACTTAAAAGAGATGAATTCAACAAATTTATTTAACTATATCACCAAATGTTTTACTACTTTTACTGGTGGTTGTTGGCACATAAAAACAAATAAATATGATCTATTAATTACAAGTAGATCGGTTTGGGTTTTGATAGTTCAGTTTGGAAATAATATGACCAAATTCAATGTTGTTGGGAAATGAAAACTTTAATTGTGGATTTTAATCAAATGATTGCCAATAGTAAACTCTATGTGCAGAATGAGAGAACTTTTTATATTTTTGTAATGTTTCTATTTCCCATGTGCTTAAATGATGGATCAAAACTTCTAAAGAATAAGATGAAAGCATCTGTTTCTTCAGGATAATAATCTAAGCCATGTGCATGAACAATATGAGTTGGCAAATTAATATGTAAATTAAACAATGTTTCAAGATTCAACTGGTGACAATAATCAAAACTCACATAAATATTAACTACTTGCAATAAAAATCATATTAAGAAAAGATCTTTTTTTTTTCCTTACAGAAGCTACTACAGATGCACGTATAGCAACTCTCAGAACTGCCCTGCAAAGAAACAAGTTCAAAAAACTGATGCAAACCCTTTTGTATGTGAAGTCACATACCGTGGAACCCACACTTGTAATCAAAGTTCAAATTTACCTATAACACCTACACCAACTTACCCAAATTTCACATTTACTGATAACACAGACTTTCTGCATAACTTCAAGGCAAACCTCAAGGTTAAAACTGAAAACTTGGACATGAAAGTTCAAGAACCAGATTTTTCACTGTTTATCTCCACATTGAATGAGAATTTTCAGTTCTTTTCGGATACAACTCCAGATTCTCACTATTTCTCAGGATATCCATCTAGTTCTGAACAATTTTTTGAAGGATTTTCATCAACCTCCACTTCTCCGTCACCCATGTTGGACATGGATTTTTCTTTCGATGATTTATGCTTTGATGATTCTTGCTTCGTTGATTAGATGCACTCGTATGCGAAAGGAATAGAGTGAAGGTGGAGAGTACAAGTTAGTTAATGTATAAGCATACTTTCAATTTGTAGGATTTTTATTCCACTGTTTCAATAGTTGTTGAAATTCTATTTTCCTATTTTTGAACTATGTAACTTAATTGGTTTAATTGTTTGAGTAATAAAGTGTAGCTAGATAATGGTATTCCAATCCAGCTTGATGTATATGAGCGAATGACTATATATGTTATTATATAATGGCATTAATTGTATTATAACAGTTTGTGCTACCAACACTGTCATGCATTGCAACAGCAACA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250516.1	1.1e-43	probable WRKY transcription factor 41
Swissprot	Q9SUP6.1	2.4e-27	WRKY DNA-binding protein 53
trEMBL	A0A1R3L607	7.9e-44	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G11070.1	35.08	7e-35	144	AtWRKY41;WRKY41	WRKY family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01787	AT4G11070.1	305	158	8	1	277	4	296	35.08	7e-35	144
AfisC4G01787	AT4G11070.2	281	153	8	1	277	4	264	37.01	1e-32	137
AfisC4G01787	AT4G23810.1	267	112	7	1	213	7	265	34.83	4e-30	128

Ortholog group

Species	Genes
Allium cepa	g530204.t1
Allium fistulosum	AfisC4G01787
Allium sativum	Asa4G01563.1
Arabidopsis thaliana	AT4G11070.1; AT4G11070.2; AT4G23810.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	113	172	85.7	1.8e-24

Gene Ontology

Accession	Ontology	Name
GO:0000302	P	response to reactive oxygen species
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001101	P	response to acid chemical
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008219	P	cell death
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0010035	P	response to inorganic substance
GO:0010200	P	response to chitin
GO:0048527	P	lateral root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network