result

Gene information

Detail information of AfisC4G01812

Location

Gene	Chr	Start	End	Strand
AfisC4G01812	chr4	343521182	343526603	-

Sequences

CDS

>AfisC4G01812
ATGAGTATACGATGTTTTTCTTGCATAAGCCCGCGCAAAAGCGAATCACGAAGGCGAATGTTGAGTTTGCCTTCGCATCAGCAACCTCAGTCGTTGGCCAGCTTCATTACTTCATTAGGTGAGGCGGAAACAGAAGGCATTCCTGCTTCTCCGAGCACGGAACAGTCGAAAAATACTCAGCAATTCACATTGCAAGAACTCGCTAACGCAACGCAAAACTTCAAAGAGGCAAATTTACTCGGTGAAGGCGGTTTTGGTAAAGTATTCAAAGGGCGCCTTGATTCTGGACAAGTTGTTGCAATTAAGCAACTAAACCATGATGGAATGCAAGGAAGCAAAGAGTTTCTAGTAGAATGTCTAATGTTAATCATGTTGAATCATCCACATCTTGTGAATTTGATCGGGTATTGCACACAAGGGGAAGAGCGAGTTTTAGTATACGAGTACATGTCGCAAGGTAGCTTGGAGACGCATCTTTTTGATCTTCCTCCAAATAAGGCGCCTTTGGATTGGAACACGAGAATAAAAATCGCTCTGGGGTCATCTAAAGGGCTTGCATACCTACACAATGCACGGAACCCTCCAGTCATATACCGTGATTTGAAATCTGCAAACATATTATTAGACGATGAATTCAACCCTAAACTATCTGACTTTGGACTTGCTAAACTTGGTCCAATTGGCGATAACACTCATGTTTCTACAAGAGTGATGGGAACATATGGATATTGTGCTCCTGACTATGCGATGAGTGGAAAGTTGACTGTGAAATCCGATGTGTACAGCTTTGGAGTCGTGCTTTTGGAGTTAATGACAGGAAGAAGAGCTTTTGATTGTAATAGGAAAATGGGGGAGCAAAATTTGATTGTTTGGTCGCAACCATATCTGAAAGATAGGAAAAGATTCAACCAGCTAGCGGATCCTTTGCTTCGTGGACAATACCCTCCTCGATCGTTCTACCAACTAGCAGTAATAACTTCCATGTGCCTCCAAGAATTGCCTCATAATCGTCCATCAAGCCGTGATGTGGTCAGTGCCCTCGAGTACGTTGCATCTCAGCCGTACATGTCAGCTCATGCTTCTTCCAAACTGCCCAAGGCTTCTTCAGCATTGTCACTTGATTCTAAAGAAACTTCCAATCATACAGGTCATGACAATTCAGAAAACCCTGAAGTAGAAAGACATAAGTCTGCCTGA

Protein

Gene

>AfisC4G01812
CTTTCCCTTTCATCCATTAACAATTATACCCATTACATCACAAAGGCTTACATCGACTATTTTCCAAATTTTCCCTCTTCGATATATTTCCATTATATTTCTCAAGGGGATCAAACGAATTAATTTCTTCCCCTCCCCTGTTTAAAGTTTTGTAAACAAGGGGGAGGGGAGGCCTTTTCATACCTTTGATTCGTTTCGTTCATATTTTTCTTCCAGTTCGAATTCCTTCTTTTTTCATCTAAAAGAAATATGAGTATACGATGTTTTTCTTGCATAAGCCCGCGCAAAAGCGAATCACGAAGGCGAATGTTGAGTTTGCCTTCGCATCAGCAACCTCAGTCGTTGGCCAGCTTCATTACTTCATTAGGTTTGTAATTTTGTAATTGCACTGTTTCTTCATTACCTTTTTTTAAAATTAAATTTGGACATGCATGATTTTTATGCATTGATTAAAAAAAACGTTAAGGTGAGGCGGAAACAGAAGGCATTCCTGCTTCTCCGAGCACGGAACAGTCGAAAAATACTCAGCAATTCACATTGCAAGAACTCGCTAACGCAACGCAAAACTTCAAAGAGGCAAATTTACTCGGTGAAGGCGGTTTTGGTAAAGTATTCAAAGGGCGCCTTGATTCTGGACAAGTAATTTCTTTTCTTATTACTTGGATGTAAACTTCTATTTTGATGCCACAACATTTTATTTCGAAATTTTTATAGAACAATACTTCTGCATGTGTGGTTTTGCAGCTCGAGCTAGTATTTAACCTACATCAGTTTTTGTTTTCTAGGGTTTAACTTGGGCTCTAGTTGTTATTATTGTCATAAAGAAGATGGACAGTTTGTATGGCTTAGGCTATTAACATCCCTGCTGAAACTGCCTTTCACACACCTAAATTTTCAAAAAACAGAAAGAACCCCCTAATTACTCTTCACCCTTCACTTATTTCTTTACTGCCCTTCATCTTCCTCAACCACAAATACATGCTACTTCAACTCACAACTTGAAGCACTCCACCTTTGCTTTTTATTGTTTGTCTTTTGGAGTTTGATCAAAAATTTTAGAATTATTAAGATAAAACATCATATAAAATTATCCTAAACTTGAATTTTTTTTTTTAATATTTGCTCAGATTGCTCGATTAATAAGTTGTGACTTGGTTGAATTATGGCAGGAAAATCTAGGTGTGAAATGAATTGAATAATATAAAGAGGAAGGAAAAAGTGGTGTAATAGGGATGAAGATTATTGTGTATTAATGTATTTAATCCTATTAAGGCTGTTCATACTTTATCATTAAGATCACCATAATACCGAAATTACGGGGGTAGTTTTATCCATGTAAAATTTTCGTATATAATTGGGTGTGTAGAGCGTTAAGTGGGGGGTAGATAGAAGTATCCTTTTGTTTATGAATAGAAATCCCTGAATCCACCAGGCATAGATAGCTCCATTTAGCTAAAATTTGAATACAAACATAAGAGATTTTCTTTTTCTTCCTACTTGATCAGGTTGTTGCAATTAAGCAACTAAACCATGATGGAATGCAAGGAAGCAAAGAGTTTCTAGTAGAATGTCTAATGTTAATCATGTTGAATCATCCACATCTTGTGAATTTGATCGGGTATTGCACACAAGGGGAAGAGCGAGTTTTAGTATACGAGTACATGTCGCAAGGTAGCTTGGAGACGCATCTTTTTGGTAAGCTCGATCTTTAATCGCATTCTAATAATCAATTATAAAGAACCTTGCTACCGTCTTGGAGAAATGCTATACATACAACAAAGTATCGTTGTAATCGATTGTATTCACAAAACAATGTTTGTTTTGTATAACATTTATTTTTGTCAAGCAAACTGTAATTGATCATAGCTAGCAATGTTATCACAATATGATGTGTTCGAGCCACCTATGCACTTTTTGTTTAGATCTTCCTCCAAATAAGGCGCCTTTGGATTGGAACACGAGAATAAAAATCGCTCTGGGGTCATCTAAAGGGCTTGCATACCTACACAATGCACGGAACCCTCCAGTCATATACCGTGATTTGAAATCTGCAAACATATTATTAGACGATGAATTCAACCCTAAACTATCTGACTTTGGACTTGCTAAACTTGGTCCAATTGGCGATAACACTCATGTTTCTACAAGAGTGATGGGAACATATGGATATTGTGCTCCTGACTATGCGATGAGTGGAAAGTTGACTGTGAAATCCGATGTGTACAGCTTTGGAGTCGTGCTTTTGGAGTTAATGACAGGAAGAAGAGCTTTTGATTGTAATAGGAAAATGGGGGAGCAAAATTTGATTGTTTGGGTAAGTTTTATAATTTCATCTGGCTTGAATGTTCTCCTAACCATCTTTGGTGTCTCACAGGAAGAGTATACTACCTACTAACTTATAAGTAGAAATTCACCTCATAAGTTAACCATTGAAAAATTCACTTACTAAATTAGTCCATTTAAATTTATTTGGATGTGTATTTAATCTAAACTTTGAAATTCAAAATCTTATGTTGTGGTTGTTTGAGTTCTGCTTGAGTAATTTAACAAAGCAGAGGATCAAACCCCACAGAGATATAGAAAAGGACCTTAAAACAGTGACATTGTCACGATCACACTGGTCTCCCTTTGCTAATAAAACCATGCAGCTTTGCCATACTTTCATAACTTCCTTTGCTGATGAAATCCAGCATATTTTTTAATCTCGCTAGCTTAATGATATCAGAATTTTTGGGAACATTGGAAATGCAACATATCACCCAAGTGCAAATTGCTCCATTTTACATTTTTAATCTGCATCATTCCTTTACCATGACTTGCATTTTGTATCATCATCATAATCAGAGCCCCAGCCTGGCTCAAGGCGATCAAGGTGGCTGTCTAAGACTTCACAAATTTAATGAATTTCAAGGACCTTATATATGAATTTTATCCTGCTTTGAAAATGTTATATATAATGTACATCGCAAATCAAATGAATCCTCAGTGTGGTTGGGTGAAGCTTCTTATATTTGCTTATATGGTTGCCACAAGTTTGATTCCCATCCTCAACAAAATTGAACCAGTATTCAATTTTTCAGATTTTGTCCGATTTAGGGAGAAAAAAAACCTCCAAATTAATTGCAGGGAGGGCCTCCAGTTTATGGTTTTCCTAGGGCCTCATACTCCCTATGATTAGCCCTGATCACAAGTCATTAATCAGTTGACTTGATATGTATCATGATACTTCTAGAGCAAAGATGATGATAATAACAATTGTTATTTAATAAACAATCTTCTTGAGGACAAATCAAATCCTTTGTGTCCCTCTTGTCTGTCTCATGTACCACAATGATCTCAACCATTCATTTTGTATCATCGGTCATTCATCAAATAGGGTGAGTCTTACTAATTCATCAATTTATTATGATGGATGATTGAGATTTTCTATGGAACATGGGAACATGAAATAAGGGGATTGAGGAATTGAACCTCTTGAGGAGTAGTCGGAGATGATGAGAAATTCTTCAAAATCGTCCGTTACATCAACCAAAGAGCAATTGTCGTTCTTTTCTTTCTACAACCTGAGATTATGTGACCATACTTTTTGAACTTGTAGCATTGCTTGCTTGTTTCTTTGCCCTTGTATTTAGACTGATGACGTTCATCAATTCACTTAACAATATCTTCCTCCTTGATTCTGACCATGAGCTATGAAGATTCTCAGAAATCCTCAATTTTTCTCTTTTTGTGTGATTATGGAGCTGATTCAACATCTTCCATTTTCTGTGTTTATTTACATATGCAGTGGTTTTAAATTTTGATCGTATATTCATAGAAATCAGGAACCAAATTAAGGAGAAGTATTTGATTTTCTTCCCTAACCTTCACATCAACTCCGGCTTGTTGATTCGACAACTTTTTGAACACGTCCATTTACATGAGATTTTATCTTTCGACCATCTTGACCTTATCCTCTTTAAATTTAACTTCTTATGCATATCTTTATCGAGATAAATCTTCTAGAGCTTTTATGAAAGGCCGAGGGTAAAACTTATATTATCAGTTAACACACCTGGACTCCATATTTTTTCTTCTGCTTCTGAAATCTTTTTTGCTTTGCATCCTTGATGATTATGCTATGCTCTATTAAACTAGGGTGTCATTCTCTTCTTTGTCGAAGTTGGAATTTTCCTCTGTGAAGTTGCTGCACTTGAAATTGTGAAATGGCAAAACTTACCATGATGAAATATTCCAAAATTGGTTGAACCCAAAGCTTTGATACCATTGTTAGGAATCGTGTTTCTTTAATCCTGCAAGTGATACAAATTTGAGAAAGACTTAATAAAACAGACAAGGAAGATAATTAGATTTTTATATTTTATTAAAGAGAAATTAGGTATAAGATTTTATCTCTTCAATTTTACATACAACTTGAATATTGTTGCTCTTTCTCACTTTTCCAAGAGCCTATTTTACCCAGCAGGTGTTAAAACACACAACTCATTAATTTGCTTACACACACACACAAAGATTTTGTTTTTTTATCATTGACGTTTGTTTTAGAACTCTCATTATATCTATTATATATTTCCTTTTTGTGTGTTTAGCAAATATATTTTGAATATTTTTTCAATCAACAGAACTTTAGTCTATGACTTGTTCAAAATACTATATAAAAGTATGAGTTTATTATTGAATTTAAATTGGACTTTTTTTTGTGTCAATTGCATTCAGATCTAAAAACCGTTACATAGACAATCTAAAGATGTAGCATTGTCACAAGGGACATTCGGACTAGACTATTTCTACACCACTGGTATATCATATACAACATTTTATGATGTAATCAGATGTATATATCAGCAGATTCACTTGCTTGGACGTCATTCATTCTTTTCACTTTCAATGGTAGTACATATGTAATCATAATTTTCATAATTAACTTTTATAATACAGTCGCAACCATATCTGAAAGATAGGAAAAGATTCAACCAGCTAGCGGATCCTTTGCTTCGTGGACAATACCCTCCTCGATCGTTCTACCAACTAGCAGTAATAACTTCCATGTGCCTCCAAGAATTGCCTCATAATCGTCCATCAAGCCGTGATGTGGTCAGTGCCCTCGAGTACGTTGCATCTCAGCCGTACATGTCAGCTCATGCTTCTTCCAAACTGCCCAAGGCTTCTTCAGCATTGTCACTTGATTCTAAAGAAACTTCCAATCATACAGGTCATGACAATTCAGAAAACCCTGAAGTAGAAAGACATAAGTCTGCCTGATTATATAGATTTTGTTTGAAGGACGTGTACGTATTTGTATATGAAATATGGTAAATGTAATATATATGTGTGATTATTATAGGAATTTTGGGCATGAGTACTTTGCCTGCTTATGTTTGGTGGTTTTTCTTATTTTGATCCTAAAGGAAAATACTGCTCT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275792.1	8.1e-154	probable serine/threonine-protein kinase PBL21 isoform X1
Swissprot	Q9LDZ5.1	5.5e-123	Protein ALTERED SEED GERMINATION 5
trEMBL	A0A5P1EJM1	5.8e-154	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G20650.1	61.86	2e-128	455	ASG5	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01812	AT1G20650.1	354	130	2	5	353	4	357	61.86	2e-128	455
AfisC4G01812	AT5G02800.1	298	102	1	59	355	58	355	65.44	3e-121	431
AfisC4G01812	AT1G76370.1	354	148	1	3	353	1	354	57.34	3e-120	428

Ortholog group

Species	Genes
Allium cepa	g376076.t1
Allium fistulosum	AfisC4G01812
Allium sativum	Asa4G01572.1
Arabidopsis thaliana	AT1G20650.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	75	344	160.2	5.3e-47

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0040007	P	growth
GO:0007166	P	cell surface receptor signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network