result

Gene information

Detail information of AfisC4G01821

Location

Gene	Chr	Start	End	Strand
AfisC4G01821	chr4	345777169	345780765	-

Sequences

CDS

>AfisC4G01821
ATGAGCAACAACCGATGGTGCTTTGGATTTCAAATGACGTACATAATCTATTTGGTTATTTGTCAAGCTCATTTTGCATTGTCTCAAAACTTTTCTTGCAACTCTAACGATTTCAATGCTCTAAATGATTTCTTGAATGAATTTGATGGGTTTAGCTCCAATATCTCGATTTCAAGCTGTTGCAGTTTGCATTTTGTTTCATGTAATAGTGTATATTTTGATAGAAGAATCGTTGGATTGAACATGTTCAATATGAGCTTGAAAGGTACTATATCTGTATCATTGTCTGATTTGAATCAGCTAAAAAGTTTGAATCTTTCTCGTAATTCTCTTCATGGCTCACTACCTATAGAAATATCACATCTTTCACACCTGGAAGTCCTTGATCTTAGTAAGAACAAGCTTTCGGGAACTATTCCACTCAATATTAGTCTTCTTTCACTTCGAATTTTTAATATTTCGAGAAATTCATTTGATGGTATTCATCCAGTTCTCTTAGGTTCAAGTACTCTCGTGGTTTTCGACATTAGTTACAATCATTTTTCTGGTGCAATTGATACTGTTCTTTGTAGTTCTTTACCACAAATACAAATTCTTCAGCTTTCCACCAACAAATTTTCTGGAAAATTTCCTACTGGTTTTATAAATTGTCGCTCCCTTCGAGAACTCTTCATGGATCAAAATACTATATCTGGAAATTTGCCAGATGATTTGTTTGATCTAACACTGTTAACACATTTGAATTTAGAGGGAAACAATCTCACTGGCCCATTGAGTTCAAAAATAAGTAAACTTTCTAACCTCAAAGTGTTAGATCTTTCAATGAACAAATTTTCAGGTTCGATTCCTGCAACTTTTGGTAATCTTGTAAATCTAGAATCCTTTTCCGCTGGAACAAATCATTTCAACGGTTCGCTTCCGTATTCTTTTTCGAATTTGAAAAATCTTAGAATACTCGATCTCCGAAACAACAGACTAAGGGGCGACATTGCGGTAATCTCTGGGCTACACAAGTTAATTTCACTTGATCTTGGTACAAATTTCTTTACTGGGCACATTCCTTACAATATATCACTTTGTACTGAATTAACTACAGTGAATTTGGCTAGAAATTTGTTTACTGGTGAAATCCCTACAAGCTTAATGAACCTGACACGGCTATCTTATCTTTCACTCTCGAATAATAGCTTCTCCAATCTATCATCTGCACTGAGGACCCTTCAACACTGTCCTAACCTTGCATACCTTGTTCTTACGAAAAACTTTAACAGAGGAGAAGTTATGCCATTGTATGATATTGAAGGATTTAACAAAACGGAAGTTCTTGTTATTGCAAACTGCGCTCTTTCTGGTATGATTCCGTCATGGTTAGCTAACTGCATCAATTTGAAAGTACTGGATATATCGTGGAACAAATTAGATGGAACTATTCCACCGTTCCTTGGTACTTTGGAATCTCTATTTTACTTGGATATTTCAAACAATTCATTAAGTGGAGAAATACCCAGTAGTTTCACCCAAATAAAAAGCTTGATTTCTGCAAACAACATGAAAAACGAAGAAGGTTTGAGTCAAAATTTTCCATTCTTTGCCAAAAGAAACTCAAGTGCGAAGCCATTGCAGTATAATCAAGTCAGTAGTTTCCCACCTTCTCTGATCCTCAGTAACAATTTGCTCGTTGGGCCCATATTACCTGAATTCAGAAACCTAAAGAACTTGGTCATTTTTGACCTCCACATGAATTTACTTTCAGGGTTCATACCTGAAGAGTTGTCTGAGATGAAGAATTTGGAAAATCTTGTTTTTTCCCATAACAACCTTACTGGAATGATCCCTTCTTCTTTGAAAAAGCTCAACTTTTTGTCCATCTTTGATGTTTCATACAACAATCTTATAGGCAAAGTCCCTGCTGGTGGTCAGTTTTCTACGTTTTCAAGTTCTTATTTCAGAGGAAATCCAAATCTATGTGGCTTCAACTTGAAAAATTCATCATGTTCATCTCACAGATCTTCTGAAACCGAAAGAGATCAGAGCAAGAAAACAGTTATTGGTACAGCTTTAGGAATCGGGATTGGAACTTTTTCTCTCATCATCATCCTCATATATCTACTTGTGTTTAAATTCAAAATCAGAGGAAAAGAAGTAAAAATAATGGTGGACACCGATGAAGAGTTAGCGGAGTACGAGGCTTCTACACTAGTACTCCTCTTTCAAAACATGGAAAACCAAAGTGAAATGACCATAGCCGACCTTTTAAAATCAACCAACAACTTCGATCAATCGAACATAATTGGATGTGGAGGATTTGGACTAGTCTTCAAAGCAACCCTACCCGATGGGTCAAAAGTGGCTATAAAACGTTTATCCGGAGACTTCTGCCAAATGGAAAGAGAGTTTCAAGCCGAAGTAGAAACTCTTTCCCGTGCTAAGCATGGGAACCTCGTACCACTTCTAGGTTACTGTAGGGTAGCCAACGACCGGCTTATAATCTACTCCTACATGGAAAACGGAAGCCTAGACTACTGGCTACATGAAAATCCTGAAGAAGGGTCGACCTTAAGCTGGGAAAAGAGACTGAATGCCGCTAAGGGTGCTGCTAGGGGACTGACCTACTTGCATGAGCACTGTGTACCTAGAATATTGCATAGGGACATAAAGTCGAGCAATATACTTTTGGATGAACATTTTGAAGCACATTTAGCGGATTTCGGGCTTGCTAGACTTATACTTCCCCAAAACACACATGTGAGTACCGACCTTGTAGGGACTTTAGGGTATATACCTCCAGAGTATGGGCATAGTTCGGTAGCTACGTACAAAGGAGATGTGTATAGCTTTGGTGTTGTGCTGTTGGAGTTACTAGCGGGTAGGAGGCCCGTTGACATGTGCAAACCGAAACGGTGTAGGAATCTGGTGCAATGGGCGTTTGAGATGAAGAAGGAGAAGAGGGAGGTTGAAGTGTTTGATGTGAGAGTGTATGATGGGAGTTTGCATGAGAAGATGATGAAGGTGCTCGATGTTGCTTGTTTGTGTGTGAACGAGTCACCTTTGGCTAGGCCAGTGATGAACCAAGTGGGGAGATGGTTGGATGAGATTTGA

Protein

>AfisC4G01821
MSNNRWCFGFQMTYIIYLVICQAHFALSQNFSCNSNDFNALNDFLNEFDGFSSNISISSCCSLHFVSCNSVYFDRRIVGLNMFNMSLKGTISVSLSDLNQLKSLNLSRNSLHGSLPIEISHLSHLEVLDLSKNKLSGTIPLNISLLSLRIFNISRNSFDGIHPVLLGSSTLVVFDISYNHFSGAIDTVLCSSLPQIQILQLSTNKFSGKFPTGFINCRSLRELFMDQNTISGNLPDDLFDLTLLTHLNLEGNNLTGPLSSKISKLSNLKVLDLSMNKFSGSIPATFGNLVNLESFSAGTNHFNGSLPYSFSNLKNLRILDLRNNRLRGDIAVISGLHKLISLDLGTNFFTGHIPYNISLCTELTTVNLARNLFTGEIPTSLMNLTRLSYLSLSNNSFSNLSSALRTLQHCPNLAYLVLTKNFNRGEVMPLYDIEGFNKTEVLVIANCALSGMIPSWLANCINLKVLDISWNKLDGTIPPFLGTLESLFYLDISNNSLSGEIPSSFTQIKSLISANNMKNEEGLSQNFPFFAKRNSSAKPLQYNQVSSFPPSLILSNNLLVGPILPEFRNLKNLVIFDLHMNLLSGFIPEELSEMKNLENLVFSHNNLTGMIPSSLKKLNFLSIFDVSYNNLIGKVPAGGQFSTFSSSYFRGNPNLCGFNLKNSSCSSHRSSETERDQSKKTVIGTALGIGIGTFSLIIILIYLLVFKFKIRGKEVKIMVDTDEELAEYEASTLVLLFQNMENQSEMTIADLLKSTNNFDQSNIIGCGGFGLVFKATLPDGSKVAIKRLSGDFCQMEREFQAEVETLSRAKHGNLVPLLGYCRVANDRLIIYSYMENGSLDYWLHENPEEGSTLSWEKRLNAAKGAARGLTYLHEHCVPRILHRDIKSSNILLDEHFEAHLADFGLARLILPQNTHVSTDLVGTLGYIPPEYGHSSVATYKGDVYSFGVVLLELLAGRRPVDMCKPKRCRNLVQWAFEMKKEKREVEVFDVRVYDGSLHEKMMKVLDVACLCVNESPLARPVMNQVGRWLDEI

Gene

>AfisC4G01821
CAACAAACCAGTTGACCTCACCTGCTATTCTCAGTTACCTTCTGACTTTCTGTATTTTGCTACAAATTGCTGAAAGCGTAGACTTTATTTCTTCGATATTTTAATCCTATATATTTTATTGAAAAGCATAATTTTATTCGAGAATGCTATGAATTAGGGAGTTGAAGAACGCAGAATGAAGAAAGTTAAAGCTCCTTTCCTCTTTTATTCCATCTCTCTTTTCTATTTGTTTCTTTCTTTCCTTTTCAGTCCAAATCAATCTAGGTAGAAAAATAAATCTCAAAATACTCATTCGCGGTCTTCTTCATTACTAATATAATCATATGGATGTTCAAAATTTTCAGTTCTAACACACTCAAGCACATCAACAATGAGCAACAACCGATGGTGCTTTGGATTTCAAATGACGTACATAATCTATTTGGTTATTTGTCAAGCTCATTTTGCATTGTCTCAAAACTTTTCTTGCAACTCTAACGATTTCAATGCTCTAAATGATTTCTTGAATGAATTTGATGGGTTTAGCTCCAATATCTCGATTTCAAGCTGTTGCAGTTTGCATTTTGTTTCATGTAATAGTGTATATTTTGATAGAAGAATCGTTGGATTGAACATGTTCAATATGAGCTTGAAAGGTACTATATCTGTATCATTGTCTGATTTGAATCAGCTAAAAAGTTTGAATCTTTCTCGTAATTCTCTTCATGGCTCACTACCTATAGAAATATCACATCTTTCACACCTGGAAGTCCTTGATCTTAGTAAGAACAAGCTTTCGGGAACTATTCCACTCAATATTAGTCTTCTTTCACTTCGAATTTTTAATATTTCGAGAAATTCATTTGATGGTATTCATCCAGTTCTCTTAGGTTCAAGTACTCTCGTGGTTTTCGACATTAGTTACAATCATTTTTCTGGTGCAATTGATACTGTTCTTTGTAGTTCTTTACCACAAATACAAATTCTTCAGCTTTCCACCAACAAATTTTCTGGAAAATTTCCTACTGGTTTTATAAATTGTCGCTCCCTTCGAGAACTCTTCATGGATCAAAATACTATATCTGGAAATTTGCCAGATGATTTGTTTGATCTAACACTGTTAACACATTTGAATTTAGAGGGAAACAATCTCACTGGCCCATTGAGTTCAAAAATAAGTAAACTTTCTAACCTCAAAGTGTTAGATCTTTCAATGAACAAATTTTCAGGTTCGATTCCTGCAACTTTTGGTAATCTTGTAAATCTAGAATCCTTTTCCGCTGGAACAAATCATTTCAACGGTTCGCTTCCGTATTCTTTTTCGAATTTGAAAAATCTTAGAATACTCGATCTCCGAAACAACAGACTAAGGGGCGACATTGCGGTAATCTCTGGGCTACACAAGTTAATTTCACTTGATCTTGGTACAAATTTCTTTACTGGGCACATTCCTTACAATATATCACTTTGTACTGAATTAACTACAGTGAATTTGGCTAGAAATTTGTTTACTGGTGAAATCCCTACAAGCTTAATGAACCTGACACGGCTATCTTATCTTTCACTCTCGAATAATAGCTTCTCCAATCTATCATCTGCACTGAGGACCCTTCAACACTGTCCTAACCTTGCATACCTTGTTCTTACGAAAAACTTTAACAGAGGAGAAGTTATGCCATTGTATGATATTGAAGGATTTAACAAAACGGAAGTTCTTGTTATTGCAAACTGCGCTCTTTCTGGTATGATTCCGTCATGGTTAGCTAACTGCATCAATTTGAAAGTACTGGATATATCGTGGAACAAATTAGATGGAACTATTCCACCGTTCCTTGGTACTTTGGAATCTCTATTTTACTTGGATATTTCAAACAATTCATTAAGTGGAGAAATACCCAGTAGTTTCACCCAAATAAAAAGCTTGATTTCTGCAAACAACATGAAAAACGAAGAAGGTTTGAGTCAAAATTTTCCATTCTTTGCCAAAAGAAACTCAAGTGCGAAGCCATTGCAGTATAATCAAGTCAGTAGTTTCCCACCTTCTCTGATCCTCAGTAACAATTTGCTCGTTGGGCCCATATTACCTGAATTCAGAAACCTAAAGAACTTGGTCATTTTTGACCTCCACATGAATTTACTTTCAGGGTTCATACCTGAAGAGTTGTCTGAGATGAAGAATTTGGAAAATCTTGTTTTTTCCCATAACAACCTTACTGGAATGATCCCTTCTTCTTTGAAAAAGCTCAACTTTTTGTCCATCTTTGATGTTTCATACAACAATCTTATAGGCAAAGTCCCTGCTGGTGGTCAGTTTTCTACGTTTTCAAGTTCTTATTTCAGAGGAAATCCAAATCTATGTGGCTTCAACTTGAAAAATTCATCATGTTCATCTCACAGATCTTCTGAAACCGAAAGAGATCAGAGCAAGAAAACAGTTATTGGTACAGCTTTAGGAATCGGGATTGGAACTTTTTCTCTCATCATCATCCTCATATATCTACTTGTGTTTAAATTCAAAATCAGAGGAAAAGAAGTAAAAATAATGGTGGACACCGATGAAGAGTTAGCGGAGTACGAGGCTTCTACACTAGTACTCCTCTTTCAAAACATGGAAAACCAAAGTGAAATGACCATAGCCGACCTTTTAAAATCAACCAACAACTTCGATCAATCGAACATAATTGGATGTGGAGGATTTGGACTAGTCTTCAAAGCAACCCTACCCGATGGGTCAAAAGTGGCTATAAAACGTTTATCCGGAGACTTCTGCCAAATGGAAAGAGAGTTTCAAGCCGAAGTAGAAACTCTTTCCCGTGCTAAGCATGGGAACCTCGTACCACTTCTAGGTTACTGTAGGGTAGCCAACGACCGGCTTATAATCTACTCCTACATGGAAAACGGAAGCCTAGACTACTGGCTACATGAAAATCCTGAAGAAGGGTCGACCTTAAGCTGGGAAAAGAGACTGAATGCCGCTAAGGGTGCTGCTAGGGGACTGACCTACTTGCATGAGCACTGTGTACCTAGAATATTGCATAGGGACATAAAGTCGAGCAATATACTTTTGGATGAACATTTTGAAGCACATTTAGCGGATTTCGGGCTTGCTAGACTTATACTTCCCCAAAACACACATGTGAGTACCGACCTTGTAGGGACTTTAGGGTATATACCTCCAGAGTATGGGCATAGTTCGGTAGCTACGTACAAAGGAGATGTGTATAGCTTTGGTGTTGTGCTGTTGGAGTTACTAGCGGGTAGGAGGCCCGTTGACATGTGCAAACCGAAACGGTGTAGGAATCTGGTGCAATGGGCGTTTGAGATGAAGAAGGAGAAGAGGGAGGTTGAAGTGTTTGATGTGAGAGTGTATGATGGGAGTTTGCATGAGAAGATGATGAAGGTGCTCGATGTTGCTTGTTTGTGTGTGAACGAGTCACCTTTGGCTAGGCCAGTGATGAACCAAGTGGGGAGATGGTTGGATGAGATTTGAGGGCAGGGTGAGTTGTGCTATGTGAATAAGAATGTGAATTTGGATATGTACAGTGTATATAATATACGAGGAAAGTTTATATAGTTGGTGCATATTGTGATACAGCGTGGAATAAGATTACAGTGTTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249980.1	2.5e-170	phytosulfokine receptor 1-like
Swissprot	Q8LPB4.1	9.8e-132	Phytosulfokine LRR receptor kinase 1
trEMBL	A0A1R3L760	1.8e-170	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02220.1	49.43	0.0	912	ATPSKR1;PSKR1	phytosulfokin receptor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC4G01821	AT2G02220.1	1044	480	13	1	1032	1	1008	49.43	912
AfisC4G01821	AT5G53890.1	1046	507	16	15	1032	3	1028	46.94	856
AfisC4G01821	AT1G72300.1	1050	580	11	15	1032	30	1077	41.52	748

Ortholog group

Species	Genes
Allium cepa	g281292.t1
Allium fistulosum	AfisC4G01821
Allium sativum	Asa4G01580.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00560.30	LRR_1	Repeat	267	289	10.6	0.62
PF00560.30	LRR_1	Repeat	315	328	10.3	0.78
PF13855.3	LRR_8	Repeat	440	497	27.3	2e-06
PF00069.22	Pkinase	Domain	759	1022	141.7	2.5e-41

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001578	P	microtubule bundle formation
GO:0001653	F	peptide receptor activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005496	F	steroid binding
GO:0005524	F	ATP binding
GO:0005768	C	endosome
GO:0006468	P	protein phosphorylation
GO:0007166	P	cell surface receptor signaling pathway
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009554	P	megasporogenesis
GO:0009556	P	microsporogenesis
GO:0009611	P	response to wounding
GO:0009647	P	skotomorphogenesis
GO:0009729	P	detection of brassinosteroid stimulus
GO:0009734	P	auxin-activated signaling pathway
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009826	P	unidimensional cell growth
GO:0009911	P	positive regulation of flower development
GO:0010224	P	response to UV-B
GO:0010233	P	phloem transport
GO:0010234	P	anther wall tapetum cell fate specification
GO:0010268	P	brassinosteroid homeostasis
GO:0010305	P	leaf vascular tissue pattern formation
GO:0010584	P	pollen exine formation
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019901	F	protein kinase binding
GO:0031347	P	regulation of defense response
GO:0042803	F	protein homodimerization activity
GO:0043234	C	protein complex
GO:0045851	P	pH reduction
GO:0046982	F	protein heterodimerization activity
GO:0048366	P	leaf development
GO:0060548	P	negative regulation of cell death
GO:1900140	P	regulation of seedling development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network