result

Gene information

Detail information of AfisC4G01945

Location

Gene	Chr	Start	End	Strand
AfisC4G01945	chr4	365994108	365997459	+

Sequences

CDS

Protein

Gene

>AfisC4G01945
ATGGGAAGGCCTCCATGTTGTGATAAATCAAACGTGAAGAGAGGTCTGTGGACCGAAGAAGAAGATCTGAAGCTCATAGCTTACACTAACACTCATGGCGTAGGCAACTGGACTGCTGTTCCGAAAAAAGCAGGTTTGTTTACTTCAAAATTTGGTTCTTTTATATGGTACATGAAATCAGTAGAATAATTTTATGGCTAAAAGCATAAGAAGAATATTTTACTTTATCAAAGAGCATCAAATCTTGCTGATACAATCTTCTACAATTGCCACATAAATACATACATACATACATCATCAAATATTGATGATTATATCTTTTAATATATTTATTTGTTTAGTTGAATTTATTTGCAAATATATCTGTATATGTGTGTCACTGTGTGTGTATATGTGTGGCAAGATTAGAGGCTTGGAACATGAAATTTTCTGCTCTAAGTAGAGAACCAATATTTTAACTGTATGGACTCTATGGACCCTTGAGGTGGTCTGAAAGCTATAAATTATCCGCCTCCAACATTACAAGTTTACAACCCTTGATTTGCCTGTACTTTCTTTATTATAGTTTATTTCACGGACGAAGTTTTCTGTTTGTAAGTAAAACAACACTTTTATACAAGCTATGTAAACTGAATGCCAAAAAATAAAATAAAAATAAAGTAAAATAAAAAATAAAATAAATAAACAAACAAATAAAAAACTCACAGCTATGGAAATTGAACGCAAAATTCTGCTGTAGGATTAAAGAGATGTGGGAAGAGCTGCAGGCTTAGATGGACCAATTACTTGAGGCCAAACTTGAAGCATGAGAGCTTCACTCCACAAGAAGAGGAGATGATTATTAACCTCCATGCCACCATAGGAAGCAGGTACTTATTTTACTATTTTATATAGACTGGGAAAGCACTAAATGGTAATGAAGCCATTATTATTCATATGCACACATCGTGATATTATCAGCATTTTTTCTTTCTACAAGTGATTGCTACAACAAAAAAAGGAAAAAAAAAATTGTAGATGACTTAATTGGTTTCTGTTTAGATAAAATCTACAAATTTATTAGTTAGCACCCTTAAGTTTATTGATTGTACTCTAAATTTCATGATTGCAAACATGCAAAATTCATGATATGTTTCATAACAAAGTTACCCAACCATGAAGCACAGTGTGAGAAAGTTTAACCTAAACTTATGCACACACTCTTTTATTACACATACAATTAAGGCCCCAAGTTTTACATGTTATTTCTTGTTATGTCAAATGGTTTGGTATCACGTTTTGTTACTTTAAAATTTGTATTCTGCATGTTTTTCAGTTTGAGATCCCTCTCTATCTCTCTCCTCTCTCTTCTCCACACACACACACACACACATGTATGTATGTGATGTGTCAGTGTGTGTGTTTGTTGGGGGGGGGGGGAGGGGGTGGTGGTTATTGGAGATCCACATCCCATATTTTTATATCCCACTTTGTGCCCGAATCGTTTTTCGGTATTTACAGTTATCTACACTTTTTTAAAGTATGATCTACTTATTATCAACATCATGTATGTAAAAATTTATCTTATTTCGATCCTTTTAGCCCATCAAAATTAACTATGCATTGTATTGTGTATTGAAATTAATTATTATAGTCATTGATTTGAAAAAATTAACTTTTAGCAGGCAAAAGATATAAGAATTAGGTAATACCAAAAAATGGGCCAATCAAAAATTGGGATACAAAAAAGACAGTACATACATATGTGCACATCATGTACATATACACATACATATACATACACACACTCCAGTATACCGGAAATGCATGGTGTGTGCATGTGTAGACTTACGTGAAGTAGAAGACTTTGTTTCAAATAAAGACTTTGCTTCTGATATTTAGAAGCAACATTCACGAGTCCATCGATCCACTCTCATTTAATTCAACCTTCCGTTCTTTCTTTTACTAAAATTCAAAAGGATATTTGTGTAACTTTACATACGATTGAATTAACGGCGAAATAAAAAATACAGATAATATAATTACACTAATGTGACAGGTTCAGCATCCACACAAAGCTAAGAATAAAACTGAATTTTGTTATAGCTCAAAAGCTACTATTCATGTATTTATCAAAATATTTCTGGACCCAAACTGAATTTCAGGTTGGATCCAAATTAGGTATTTCACTACTTTGGTTAACACAGAATATACCTCTAACACAATTACAATATACACGCAGGTGGTCTGTGATAGCAAACTATTTACCAGGTCGAACGGACAATGACATAAAAAACCACTGGAACACAAAGTTAAGCAAAAAACTTTACCAACAAGGCATCGATCCAGTTACTCACAAACCAGTCTCCGAGATTATGGAACACATTAGCTGTCTTACGAACACTCAGACTCAGTATCAGACTGCTCCTGAGAGTTGTACCACAAACCTCAATCGAGATCTCAACAATGTTTTTCTTGCTAAACCAGGACCAGTTCTGAACCCAGGGTTTTACGAAGCCAGTAGCTGCGCTGAAGTTATGCCATTCACCTTTACAAATGGAGGTAATATATATCTTTTTGGATGAAAAATCATTGTTTCATTCATACACAGTATCAGTTTTTCAAGTCTAGAGAAAATAGCATCTAGAGTTATAGTGTATTTACAGTAGAAAAGTAAATTAGAAAGCTGTGCTAAGAAATTTTTATGCTATGACACAATTATTTACCATTTTACTTGTGGACACAAGTAAAGCTTGCATTATAACAATTTTTTTGACACAAATTCAGTAGAAAAGGAAAACAAATGAATCTGATTTGTACAACCTTTTCTACGACTATACCTTTCAATTAAACTGAAGTGCAGAAAATATAGAATCTCATATTGAAATTATACATATTTATGACACAACAGTACAACACGAGGAAGTCCTTGTGTTATACTAAATGTTCCGTTCCTTTTTAACGAAGTACAAATTTTAACTGTGTGAATTCGACAGGCATGTTTGTATCAGTGGAGGGTTCAGCTTCATCAACAACCCCAACAACATATCCTAGCCATCATCAAGAAACATCAATTCAACAATCACACGATCTAAAATGGAGTGATTTCTTAGTAGATGATGTGTTTCTCTCATGCATTCAAGATGATAATGCAAGTAACATCGATCAGTTATCTACCAATTCAAAGGGAAAGGTGAATCAAAACGGTAAGGAAAAGCCTGAGTTTGACGACACCATACTTGAGGAGGAGGTGAACAGTTTGTTTCAAGCTCAAGCAAGCAGTTCGATTTCGTTTATTGATTCAATATTGGACCAAGGAACTAACGTGATGGAATTTTCAGAGTTTTTAAACGATCATGATGGTCTCATATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271512.1	6.8e-84	transcription factor MYB35
Swissprot	Q9LSI7.1	9.2e-62	Protein DEFECTIVE IN TAPETAL DEVELOPMENT AND FUNCTION 1
trEMBL	A0A1L5JHR2	4.9e-84	MYB transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G28470.1	42.51	3e-62	235	ATMYB35;MYB35;TDF1	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01945	AT3G28470.1	327	152	7	1	302	1	316	42.51	3e-62	235
AfisC4G01945	AT5G56110.1	141	51	0	1	141	1	141	63.83	1e-52	203
AfisC4G01945	AT5G16770.2	170	71	2	1	168	1	167	55.29	1e-50	196

Ortholog group

Species	Genes
Allium cepa	g165094.t1; g165095.t1
Allium fistulosum	AfisC4G01945
Allium sativum	Asa0G02747.1; Asa4G06529.1
Arabidopsis thaliana	AT3G28470.1
Oryza sativa	LOC_Os03g18480.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	56.5	2e-15
PF00249.28	Myb_DNA-binding	Domain	69	110	52.9	2.6e-14

Gene Ontology

Accession	Ontology	Name
GO:0000162	P	tryptophan biosynthetic process
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001944	P	vasculature development
GO:0002213	P	defense response to insect
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009625	P	response to insect
GO:0009651	P	response to salt stress
GO:0009682	P	induced systemic resistance
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009759	P	indole glucosinolate biosynthetic process
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010200	P	response to chitin
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0010438	P	cellular response to sulfur starvation
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0016301	F	kinase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048658	P	anther wall tapetum development
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:0080091	P	regulation of raffinose metabolic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network