result

Gene information

Detail information of AfisC4G02097

Location

Gene	Chr	Start	End	Strand
AfisC4G02097	chr4	392159790	392166441	+

Sequences

CDS

Protein

Gene

>AfisC4G02097
ATGTTCTTTTTATTGTGGCCGTTACCATCAGTGCACAAGGCTCTCGCTTGTGCGGAATCTGGATTGGGTAAGATTACACAGTCTTACTTCATTAATGGGAAGACTGTTTCCGAAAAGTGGCCATTGTCATTATCATCCTAATCCCCATAATTTGTAATATATTATATAAACATGAACAAACTATTATTTTGGATCATGATGAATACCAAGCCTCCATGCCTCGCAATGTGAAATCTTCTCCTAGCTTCATAATGGTTTTAAGCACAACTTTTCAAATCCTTAAAAAACACTATCCATCATGGATTAGCTGTTTCATTAAGATGTCCCCAAATTGTATCGGTAGCATAATTTAACCTGTTCTACTGAGTCGTAGCTTCAAAGTAAGAGTTACAGTATAACATATTCGTCTATGCAGGTCTTAAACATTTAACCGGTTAGTGCCATTGGGGGAGGTCCAGAGTGTCTTGGAATGCAAAATAGCAGCGATAAGGATTCACAGGACAGCTTTATGCAGTCAAAGTCTAATAATATCAATAGTCATCCATCTTGCTGGAAATTTAGTGCACCTAATTATTTAGATTCTCAATACCCAAAGCGTCCAATTGACAATTTAGAACCTCTTCATCAACATGCAGATCAACAAAATCCTTGTTTGGGGGTTAGAATTGTTGATCAAGACTCAGCATCAAATCAATCCACTGACCAATCACTTCAGTCTGTCTCTAGTGAAGGAAATCATAAGGAACAATCCTTATTATCCCAATCTGGTAGGCATTATAAATCATCATTGTAGCATTTTTTTTTTCCATTAAGGTATTGTGATCACAGTTCAGTAATATAGTTTGCATACTTTGATTATCTATCACTTGTAGTACGTAGTACCAGTCTCATTACCATTCTGTAGTTTGTACAACATGATGGCCTTTTATTTTCTTGCATATTTAGGAGCAACAAAAACATAACGCCAAACAAAATTGAAATTAGGGAATATAATACGCATATGCATATAAGTTGTATTAATTGAGTACTATGTATACTATATGCTGTAAATCTTTGGCAAAAGGTGTTGAATTGGCATCAAATACTCTACTATGTTGCCTGACTGCAAAAACATTGCAGTTTAACTTTTCCAAGTCTTAATTATCTTCTAAGCATTTTTGTCAAAAATACTAAAAACTTACAATTTAAATCTCGTTTCAAATTAAATATCTTTATTTACAATTCGATTTACATTCAGATTAAAACCTACTTAGAATCACAATTGAGAAAAAAAATATTCAATCCGAGCTGATATATTCAATATACTTATTTGGATCCACTATTCCAATTCCAATATTTTCAGACAAAGTAAGAATGAAACTAGAGAGAAAATTGAGTATTAGATTTTGATATAGAGGTTCAAACCATGGTTCAAGGTTCCGTCCGGCATGCTGGAATTTCGACCATTTTGGTCCGGTGTTGGCTGGAACGAAATTTCTGCACAAACTCAGTGTCAGACCGAAAAGTGAGAAGAAGAAGAAAACAATTTTTTTTTGAGCAAGAACAGAGAACTGTAAAACAAAAGAAGAATTGGAACaAAAAAACAATTTTTGTTTAAGGAGAACAGAAAACACGTCACTTTTGGAAGGGCTTTACTTGTATTATCTCCCTGCTATCAGGGTTGGGTTTGGGCTGATTGTTCACATTTAACAATATTTAGGAGTTGGGTCAGTGTTCGTTGGGTTTTAGCTTAATTTTAAGTAGCATAGAATAATTTGTATAAAATAATTAAATGAATGAATTTAGCTGATTTTTTTTTAAATGGAATAATTGTACAGATGAACCCGGGTTACTAAAATAATTTGTATATTTTTATCTTTGTTTAATTTGTATACAACTCAATTCATTTATAATAAAAAAGGAAGGTATATTCATATGATGCTCAAATTGATTATTTCTGGTGTCAAAATTGTTGTATGTTGTGTAATTTTTTGTATTTAAATGGAAAAAATTCCAGAATTCGCAAACTGAAATTTTCGATTTCGAAACAGAACCAAAATTACAAAAATAATCAATGAACGGAACAAAAATGGGAAACAAAATTCTGAACCTTGATTCAAACATCAAAATCAATTTCAAAGCGTGTACAAACCTAAAATATGAATCGTTTGAATTTACGATATAAGGTCCGTTTCAATTTAATGTTTGAACTTTACGATTTACGATTTGAAACTCATTTTGAAAACATTGCTTCTAAGCACATTGGGATGATTGGTATTAAAGCTATCAAATGAAATCACATTTCTTTGAAATCAAATTCTCTTTTTTCATTTAGGCAATGATGATTCCTATGAGAAAAACGCCGAGGGTCAAACGAAGTCCATGCTGTCTCTAGGATCTACTGAAGTTGCTTTTCCGCCTCCAAAGTTGGATTGTAATCTATCTGTTGTCTGTTTTCTGTCTCTCTTTGATTTCTAAGCAATTATGAAACTTCCATTTGTGTAGCTACTAACGGTTCTCAAATATAAATTATAGGGCCCCCTTCCATACACGTATAACAACCAATTGTATGGCAACTTCTTACCTGCTTATGCTCCTCATGCTGGTGTAAGTTGCTGCATCATCTCTCCTACTTGTCTGCGTTCATTTTTAATTTATTACGCATTTATAACTGTAACCTCAAATATGAATTACGTGCATTTGCTGGAATTAATTTCCACACATCGGACAAACTGGTCAAGCAATATATAATTTATGCTATCAATGAAATTTCATTTAGTTCAAGCTAGTATAATATTTAGAACTTGCATTCACTTGGCTGAGAGACAATTGCTTCTTGCTGAGCTATTTAATTTTGCTGCCAGAATTTTTATGATATTAATTGCTATGATATGCACTTCCAAGTTTCAATGAAAAAGCGATCGGTTTTAATGCAGTTTTACATATGCAAATTCGTCTGATATTACCATTACATGAAAACTAGGACCAATGGCATTGTTTAACACCTAGCTTTCAGCTGCACTATATTTTACTATCCTAATAAAATACTATGCTATACTCTGAGATCTGTTCATATTTGTCCATCTGCCTCCCAACTTCCTCCAAACGATGACAGATTAATGTTAATTATTGACAATTATGGTGTATTCTCATGTCCATTTCAATCTACAGTTGATGTCAATATAAATAAATAACAATAATAGTAAATTAATCTAAAATCAAAGATTAAATATCCACTTTGTAAATGCTGTTTTCCTTTAGGATTATCATCTTTCATGTTCGCTTGCTTTGCTTTATATGCTACTTCAATTTCTTAGTGTAGAAATTCACTAGTCATTTGTAAACACATCATTCCTTGTTACTTACTACAGCACAATCAACTCTTTTAAGTGCTAGCTCAAATATACTACTTTGTCTCATATCAGAAAATACAAATCCTAGAACAATATTCACAGTAATTTGGTATGTGATGTGATTGTCATAATTTAAATTTGAACAAATGAGTTGCTGTTTGTAACATGCAGCCACGCAGTTAATTTTGGATTTTCATCTGTGAATTGGTTTTATGAGCTGTTACATTTTGCATATTGCACTCCAGATGGTCTTGATTCTCCTTTTCAAGCCAAAAGTTTATTATTTCCGGTTGTTTTTAATACATCCATGTATTAGGAATTTGATGCGTCATCATCTTAATATCTTTATACTCCACATGTGTGTGTCATGGAATTACACAAATTGCGTCTGTGTTAGAATGCAGTTACTTCTGCAACTTCTTGAAATTAGATCACTGATAGACAGTAACAGATTCACATGTTTGGTCTCAAAAGTTATTTTTAGTACTGTATTTTGCTAGCATAAGCCCTTCAAATGCAGTATTAAACAAAAAAAAAGCTCTTGCCTACATTTTTGTTGACATCCTCATCTACACATTTTTAATAATATCCAGGTCCACTTTAAAAAACATCTTTGGACATCTGGGTAATAAGCGTACCATCTTTTAACTATACTCTCCTCCTTTACTAGATACTGTAGTTTTTAACAATATGACACATTTACAATTGCAGTTAACTCTAAGTAGTCTCCCCAATCATAGGCTTTTCATGTAGATTACATCACATGATGGCAGATTATTTTACAATTACATATTTTATTGTGCCCATAATATTTCTATAGTAAGGCTTATACAAACATAATGATTTCCTTAACTGTAAGTATACAAACTAATTTGATGATATTTGTTGATATGGTTCAACCTAGAAATTTTGTTATGTACATTGTTACATGAAGGAATTTTCCATGGATTGCTTTTTTCTTTCTATCTTCTCTGTGTATCGAAAAAATAGAACTGTGGTAGATTTTTTTTCTTTTTTCTTTTTTTCCTTTTATTTCCCTTTTTTTGGCTCAGTGCTAATTTCCCTTATTAAATACACAATAATATTCATGTTAAATGTTTGTAAAATACAGTTGTGCTGTATAGTTTTTTTAAAACTCTTCAACCATGTTCGATCAGTCTCTATCATGGGTTTATTAAGTTTAGGTAATTTTTATTTTTATTTCATTTGATAGATTCCACATATGATGGGAACACCTCCATCTTCTAGAATTCCTCTACCTCATGCACAGACTAAAGAAGAATCCATTTATGTTAACGCAAAGCAATACCATGCAATACTTAGAAGAAGAGAGAAGCGCGCAAAGCAGGAGGCTCAGGAAAAAATTATAAGAGCAAAAAAGGTGTGCATTTTAGTTATATCTAAGCATTTTTTCTCATGATTCTCCAACAAATTTACATAGTTGGATTAAGGAGAAAAGTTGAGTGAAATAAACTAAACGAAACAAAATTATAGTATATTTTTCTTTATTAATCACCAAACTTCCTTTACAAGTTAATCCTTCAGTATAAAAAAAACCATAAGTCCTTGATGCCTTTTTCTCCCTAAGGTGGTTAATCCTATTACCAATTTCCACTGTTGTCACCAATCGTTATAACCATTAGAGACATTCTTAAATATATTTACTCATAAATCTTAGCCATTAAATATAATATATACTACACATTTTTATTGGGTTCTTATCCCCATTTATAGTGGAATTCTCTGGTCTGCATGTTAAACACATACTTCGGTATTTGTTACAAGGTTGTTAGTTTCGAGGTTCGAACTCATGACCTTTGGTCTCGCAGTTCAGACCATTAACTAACTGCACCAACCCCGTTGGCTTACCATGTATTGATCTTTCTACTAGTATTTCAACAACTTCTCTATCTACTTTAGTAACTCAAGTTTTCTTCATCATTTTAAAACTCCCCTACATATTGTCCGTCATCAGGGGTAGATCAACATATACTTTTAGTAAAATACCCATCAGTACTCTTGTAACCCAATGAATAAAGTACATTACGTGGTACATTTTAGGGATTGGCAACTTACCCATTCTGTGACTTTGGGAGTGGACATTCTTGATTTGGAGGCCAGTTTCCACCCTTATTCTTCTTGCAAAATAAATTTTATCGATAGACTACACGTCTTTCTTAAACGGCATCTTGCCACAGTGCATTTTCATATTGAGTAGAGTAGACTAGGGACCATAGAATTCATTGTGAGGACCTCATTTGAATTTGAGTTGTTAGGTGATACTATAATCATCTCCCAAGTTTCTGCCTAGTGATATACCAAAAGCATGAAGATTCGTTACTCATATAATAATGTCTATTCAATGGTTAGTAATCAATCCATTATGGTTTGAAATTTTGAAATTCATTTTAAGTGCTCACCAGTCGATCCATCCTTCTTTAGCTTTAAATTCAGCAAATTTTGTATAAAAATGGTTTGCTTATTTTATAGTTCTTTGCATGGATGGGCCTTAATTTCATCCACTATCGATAAGCCAATTTTTTGTTTACCATAAAATGAAAAAACCAATCATCCAAAACTGCTGAATGAGTCCTATAACTTTTCCTATATATCGTATTCTGACTCTCTTCACATAACCCATTTGGTTTCCTTTCGTTTTCCAAATATTTACGGAGATTATTAGAACTACCAGTTTTCTTTGGAGATTTTTAAGCTTCCAAATTTTTTTTTTGTGTTCACCTTCACCTGGCCCTTCTCTATCTTTCTTTAATAACGTTGTGTAGCAGACTCATTGTTATGATATTCCAGGATCTTTACACAACTATATTAAGAAGAAAGTAAATAAAAATAAACCAGAAATTATTTATGGTTTTTTGTTACTTGCTGAAATTTCCTGATAATTTCAGTACGAATAGTAACATTTCATTAATCTTTTTACTCCCTTGATGTAGACTAATTATTAGATATACACTCTTGTATGAAAAACAGCACAAGTTCACTAGTTATATAAAAAGCTAATAACTGCTACTAATTGAAATATTTATCAGCCATATTTTCACGAGTCCCGACGTGTCCATGCAATGAAAAGGGTCCGAGGAGCAGACGGTCGCTTTATAAACACGAAAGAGCTCCAAAAAGAAGCACAAAATTCTGCAGAAGACTGCAACAACAGTGGCAATAGCAGCTCCTTAACATGTTCCGAGAAATCAAACCTCTCCAGCAGTGGAGACAAAGCACTCTACATTGATGATCAGGAAAACCATTTTGGCTTTACAGACGGTTCTAAAGAGTTAGACTGTAGCGGTGGGTCGCCTAGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	QFE32168.1	4.5e-48	nuclear transcription factor Y
Swissprot	Q9SYH4.1	1.4e-22	Nuclear transcription factor Y subunit A-5
trEMBL	A0A5J6SCZ9	3.3e-48	Nuclear transcription factor Y subunit

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G54160.1	46.30	3e-28	122	NF-YA5;NFYA5	nuclear factor Y, subunit A5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02097	AT1G54160.1	162	70	7	23	175	92	245	46.30	3e-28	122
AfisC4G02097	AT1G72830.1	171	81	5	65	217	135	304	41.52	6e-28	120
AfisC4G02097	AT1G17590.4	107	46	2	65	170	133	235	52.34	4e-27	117

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02045.12	CBFB_NFYA	Family	108	162	81.6	4.5e-23

Gene Ontology

Accession	Ontology	Name
GO:0000049	F	tRNA binding
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001221	F	transcription cofactor binding
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0016887	F	ATPase activity
GO:0006400	P	tRNA modification
GO:0009414	P	response to water deprivation
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009785	P	blue light signaling pathway
GO:0010262	P	somatic embryogenesis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016602	C	CCAAT-binding factor complex
GO:0032993	C	protein-DNA complex
GO:0033588	C	Elongator holoenzyme complex
GO:0043457	P	regulation of cellular respiration
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	P	microgametogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08064	NFYA, HAP2; nuclear transcription factor Y, alpha	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network