result

Gene information

Detail information of AfisC4G02190

Location

Gene	Chr	Start	End	Strand
AfisC4G02190	chr4	406996041	406999550	+

Sequences

CDS

Protein

Gene

>AfisC4G02190
TGAACGAATTGTGGATTGTGTGCTGCGAGGGACAGCTTGCACGCAACCTGCTTGATGATTTGTCTAAAAAAGGTATCTAACATTTATTTATTTTTAAGAGAATTTTTCCGCAATCTCAATGCTTTTGGCTATGGTTCTTTCATACGCATAATATCCATTCTCTAATTTTAGTTGATTATAATGAGAATAGTTAGGTTGAAATGGGATTGGTTAAGATCAAAGTATATGTTGTCATAAATCATTGATTACTAATGTATGTATATATTAAGGAATTTAGACTCACGTTGTATTTTGCTCAATTGCTTTCAGTGCTGCATTTTTTTTTAAAGAAGTTGTGGATTTTTAATTGCAAAGAAGTGGAAAAATGAAAATCAAGGGATAAAACTGCTTTTTATATATTACTTCGCAAATTCTATGTCCCAACTTATATAGCATATTAGTTTATGGCAGAAAAGTTTATTTTATAAGGTACAACAGTTACTTTAGTCGATATGAATATTAAACTATATCTGAAGGAATGACTTCAGTATTTAGTTTGTTTTGTCACTGGAGTGAAATTTAACCCAGATGAATACTTTATCATATCTAAATATCTAATAGAGTGCATTTATAACTCTTTCATGCATCTATAAACACTATCAGTAGAAAAAGAAGATAAAAAATGAGGATAAGATTTTGCTGCAATGTATATAGTTGTAAACTTGGAGGAACATGATATGATGTGTAAGTTTGTATCCCAGCCAGCTATGTAGGACCACATGCACACACTAGCAAATATAAAATGATCACCCCTTATTTCAGATTCCCCATCACAAAATTGTGAGTGGAGCTATGTTGAATTAGATGGTGAATTAGGTTGGCATTTTTGTATGAGAATATATCAAGGGGTGAACTGCCCAACTACAGTCTATTTTTTATGATTTTTCTATTACACATTAGGAGGAAAAAAAAAAACAATTTATGAACGACTATTGAGAGTTCAATCCAGGTTAAAGTCCAAGGTAAATTGTACATAGTTATATCCTTGAATTATGTTAGTCATTAGTATTAGTTTTTTTCCCGTACTATTTAAAACAATGAAGGTAACTTTCTTTGGAATGTTCCAAATAAACCGGGTTAAACATAGGAAAGATTGCGTGTTAACTTGATGACATATACTCTATAATTTTCAAAAAAGATTTAGACTATCATCAGTATTTCAGTGCTTTGAATAGATGAACCATATGCGGGTAAGTGAATGCAACTATTTATTCCACTTAAATGTGAAGTTCATTATTATTATTATATTTTTATTTATTTTCATTTTTTTGCCTTCAAAACGTATCATGTTGATAAAACCTGCTTTTGAAGAACATCTTAGTTATCAAAACAAATTTTCTATAGTAAAAATTTGATGAACTTATCCTTATTCAAACCCTTCTGATTTTCAAAATGGGCAAGAATATTTTGCTCAATTTTTTTAATTTGTTTATTATTATTATTTCTTTTTTTGCTAATAGTTTTAACTCTATCTGTGATACAATACAACACAGCTCTAGAGCCTCTGTTTGAAATCATTGTTAAGTTGGCTCTGAAATTTGGATCTGTAACTACTGTGCGTTTCCTATCATATTGTAAACAGTGTATGTGAAGAAATAGAACAGGAGGCACGACAGCTATATATTTGTTAGGTAGCATATCATGCAGCTCATATGCTAGGACCCCATATTTAAAGATTCTTCCCATCTTTTTTATGTATATACATTTCTATTGCCAGCCCTGTATTCTGCCTTTACTTGTTATTATATTACGTATACTAGTTATGCAAACAAAGTTCAATTAGTCTTCATGATATACATTTCTGTGCTACCATCTATGCTTTGACGTTTATGATTTAACTTTCTATATCTCTTTACTAATGGTTGTATAATACTATAACAAATTAGTTGTCATGTTATAAAAAGAATTTACTTAATTCCCTTTCCCTGATTATAACTCAACAGTTGAACTGTACAGAGAATGCCCACTGACATGTAATTGAATTCTTTGGCCATTATCAACGAAGACAAGTTACTGTTTTGGATAGCACCAGAATTTCATTACAGCAAGAACTAATTACCAGAGTGGTGAAAACATAGACTTCATATCAACAAAGATACCTCTTTTTTATATATATATATGCACTTATTATAATGCATATTCTTCCTACTACAATTATACAACCCATGTTATGCTTCCATAAAGTTCTCTCTCACTTCATTTTCAAAACATTTGCTCCCCAACCAAATGGTCAATTCAGACCAAATGGCTTGTAATGGAATGTCTTCTTCTTTCTCCTTTTTTCCTTCTAACTTCCATGCGCAACAACTACAGTCTCAAAATGAAATCGAAGATCATCAACAATTCACTCACAATTCTTCCTTCTTCTCTCTCCCCGCTAATCCTCAAGACATTAAAGGTAATAACATTGTAGTAAGAGTCTTGTGTACTAAATTTTACATTAGCATGCGAATTATCGAATATTTAACATAACAGGTGTGGAAGACGATGATTACTCTGATGATTGTTCGAGAGGAGGGGAGAAGAAGATGAGGCTGAACATCGAGCAGGTGAGAATTCTTGAAAAGAATTTCGAGATTGGAAACAAATTAGAACCAGAAAGGAAAATGCAACTAGCAAGAGCAATTGGATTGCAACCAAGGCAAGTTGCTATATGGTTTCAGAATAGAAGGGCTAGGTGTAAAACTAAGCAATTAGAGAAGGATTATGATGTGCTTAAGAGGCAGTTTGAAGCTACTAAGTCGGAGAATGAGGCTCTTCTTGCCCAGAATAAGAAGCTTCAAGCTGAGGTAAACTTGTTACAATATTGTATATGCCTATCTTGTTGTATAACATAGAACAGGGAAATGTGGCCGTACCTTTTTTCCTTTTTTTTTTAATCATAGCCATTTTGTTGTCTGTTACCTTACCAGGACACGAACTCATTTAACTGCATGACTTCCAGTTAAACTACTTTAAATCAACTTCTCAGGATAGATCAATTTTATGCAACTAGCTGTCTTACAACTATTCTATATATGATGATTACTGGTTCTATATGATAAAATAATGGATGTTAATTTTCGTTGTAGATAATGGCTCTTAAAGGGAGAGATACATCGGAACTAATCAATCTGAACACAATACAAACGGACTCGTGCAGCTCAGAGATCAATTTGGATATATCAAGAACATCGACTATTGATAGCTCGCTTAATCATCAACAAAGCATTCCTTTTTTCACTTCGATTAGGCCGCTTTCGAATACAATGGTGCAAGTTCCTGATGAGAATTTTAATAATTATCTGTGCAATATTGATGATCAGTCTACTTGGTCATGGTAATTATTAATTAATTTCTTCTTTTATTGAATTTACAATATGTACTTATATATATGTTTTGCGCTTTCTATTCCTGTGTTGCTGAAATTGTGGAATAATGTTGTGGTAAATCAAATTTATTTCATTCTTTTTTTAACTTTCTTGTGGAAAT

Functional annotation

Database	accession number	e-value	annotation
nr	ONK65242.1	4.1e-63	uncharacterized protein A4U43_C07F35130
Swissprot	Q8LC03.2	6.5e-34	Homeodomain transcription factor ATHB-13
trEMBL	A0A5P1EH75	2.9e-63	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G26960.1	49.41	3e-54	208	AtHB23;HB23	homeobox protein 23

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02190	AT1G26960.1	253	109	9	7	245	1	248	49.41	3e-54	208
AfisC4G02190	AT1G69780.1	293	104	8	7	245	1	287	44.03	2e-51	198
AfisC4G02190	AT5G15150.1	228	102	5	34	245	74	300	47.81	9e-46	180

Ortholog group

Species	Genes
Allium cepa	g490100.t1
Allium fistulosum	AfisC4G02190
Allium sativum	Asa4G01738.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	75	127	54.1	9.3e-15
PF02183.15	HALZ	Family	129	169	53.9	1.3e-14

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009739	P	response to gibberellin
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network