result

Gene information

Detail information of AfisC4G02322

Location

Gene	Chr	Start	End	Strand
AfisC4G02322	chr4	439891187	439894372	-

Sequences

CDS

Protein

Gene

>AfisC4G02322
ATGGCAACAATGAGTTTGCCACCCGGGTTCAGATTTCACCCTACCGATGAAGAACTCGTTGCTTATTATCTAAAAAGAAAGATCAACGGCAGAAAAATGGAGTTGGAAGTTATTCAAGAAGTTGATCTTTACAAATGTGAGCCATGGGAGTTGCCAGGTGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTATTTGGTTGATGAATAACCAGTACATTGCTTGTATCAGCTATCCAAGTATATGTTTATACGATGTACTTTAAACCGTCAAATTAACTACATTAAATTTTAGAAGCATATTATAATTACAATGCAAAAATATGATTGTAGAGAAGTCATTCTTACCAAGCAAAGATTCAGAGTGGTTCTTCTTCAGTCCTAGAGATCGAAAATACCCAAACGGATCAAGAACAAACCGAGCAACTCAAGCAGGATACTGGAAAGCTACAGGCAAGGACAGAAAAGTAAATTCACAAAAAAGAGTAGTCGGCACAAAGAAGACTCTAGTGTACTACAGAGGAAGAGCTCCTCATGGCTCAAGAACTAACTGGATCATGAATGAGTATCAACTCGATGAGAATGAGTGTGAATCTCCTTCTGGTTTACAGGTAACATACACCGATGGTTACAATAGTCTTATCTCTTTTTTTCTTTTCTTCGGAGTTATATACCATATAAAACTATTTTGATCATTCCAGGATGTATATGCACTGTGCCGGGTATTCAAAAGAAGTGCCCCAGGCCCGAAGATCATAGAGCACACTGAACAGTCATCGGACAGCTACAGTCAGTCATTGCAATACGAGTCATGTTCATCGAGCATTGTAAGAAAACCTGCTGATTTGTCCACTGATGTTGAAACAAAGTGGGTGCAGTTTCTTGATGAAGACACGTTTAATATAAACACCAATGTTTTTCCATTTCAACATCCGTCGTATGAGGTACGTTCTTTGTGCCATGTCTTTTGATGTCCAGATAAACTGAACGTTGTCTGTAAACTTCTAAAGGGATACGAATGAATGCAGATGCTACAAAATGGGGGTTCCTTGGAGCAGGAGTGGATTGTGAGTGCTGAGCAATTTGATGTGCCAAATATGAAAATGTTTGGTTCTGAATTTGAAACTGAAGGTACTACTGAAGTTGGTATGAATGATGATTCAAGGTACCAAAACATTAGCACTCATATTGAAGAATTTACCTCGTTACTAGAACCGAAACATGATCAATTTTTGAACATGATGGATTGCTTGGATTCTTCGAGTCTAGTCGACATTTTTGATTTCCAAAGAAATTATAAAGATGATTCAAACTCAAGCGCAACGTTCATTTGAATCTTCTTGGTAATTATTAGTAGTAACACTGTAAGAGCGCCATGAAGTGATATTCCTGGAAAAGGATTGAAATGTAAACGCAAGTTTGAGGAAAGAGGCATAATTCTTTGAGAGAGGCATGAGTACTAACTGCTAATTCTATTGTAATCTACACCATTAATATAAGTACATTTATATATAAATGTTATGTGTTACATGATATGATAGCATTTTCTCTGTAAAGCTTGCTTCTGTTTATTTTTTTAATTTTTTTTCCTTCCCCACAAATATTTTGTAACAATTTTACAAGGTAAATACCGATCTATGATCATCAAAAATCTATATTCAAAGTGATCGGGTGTCAATGGAAATTAATCACGTATCAAAGTGAAACCTAAGACACTGGTAGTAAGTTGGATAGCACAGGGAATGGTTGGTATTTTAATACCTTTATAGTTAATTAGTGCTTATAAAGAAACTGAAAGCATATTACCATTATTTTAGGAAACGAACTATAAATTTGTCTCATGCAATAGTTCCTACAACATGAGCAAAAAAGCAAAGGTCTTGAAATGTGTGAAGAAATGAATATTTACCTAATTTTTCTAATGGATATAAAGCATGGCAAAAAAGAAAACCCTACGTAACTTTTCATTCACATCATTTATAAAGCAGCATGTAGAATCCTTCTTTTGTCTTTACCACCTTCCATATGCACCAACTTGGCAAATCATGATAGAAGCCTAATTGTTGAATATCTAACGCAATTCTACATGCGATGTTAAAAGTAGGAAGTCTATTAAATTTCAATGCAATGGTAAACTGTAAAATGAAACAATATTTAACAACAGTAAATGGACTATGATCATATGCGCTAGTTGTAAACCAGAGTTCTTCTCTAATTATAATTATAAGATCAAAGATCAATCAATTCAAAAAATAAACTAGTATAACCGCACGACGGTGGGAAAACCGACCGTTGGATTATATAATTCTAAAAGAAAAATATTTATTGCGAGTCTGTAGCTTTGACAAGTCTGTAGCTTTGACAAGATTGGCAGATAGGTTGATGGCATGGCGACGAAGATGAATAATGAGAAATATAGCGTTTGTAGCATATGGGTTTAAAAAGAGAAAGGTCGGGGGAAAGTTGGATCTGGAGAAACAGAATTAGATCTGGAGATAGATATTTTGAAGCACAGATGCGAGATAAATTAGGGATTTGAATTTGAATAAAGAGAATTGCAGAGGAAACGTAAAATATCAGAAGAGAGGACACGATCTAGAGGATAAAATTTGGGGGAGAAGAAATGGGGGAAAAAATAACAAAACATGGAGAATGTTTTTTTGGCTTCAGGAAAATTGATTTTGCCTAGTAGAAGTAGGCAAACCTCCCTACGGTCGGTTTGATAAATAAAAAGGTAATATTTAACACATTTACAACTAGGTCAAATTTCTTTTTCCCTCGGGACACGGTAAAATGTCAAGTTTAAACGCCGATAAAAGTTGCTACCTATATAAAAGATTTCCTCAAAACAGAAAGACAGGATCAGTTTAGAAATAATGAAAATTACAGGTTGTACATTTGTCAATGCAGCACCTGTGGTCCCATAGTGCTCCTAAATTCAGTATAAAATCTATATGGGTACCTAAGAAGAACAAGATGCTCCTATGTTCCCGTTACTAAGGGCATCTCCAATGGTGCATTTACATCTTGAATTTGCCAAAAAAACACCTCCAATCGTCCAATTCAGACTGAATATTCAGCTGAAAGTTCAGGATCCAGTTCAGGATCCTGAACTGGACTTGGACGCCCATTTAATGGGCGCCCAAGCCCTGGCGCCCATTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248886.1	2.2e-90	NAC domain-containing protein 86-like isoform X1
Swissprot	Q9FFI5.1	2.6e-72	No apical meristem-like protein
trEMBL	A0A5P1E0H8	1.6e-90	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G65910.1	63.22	3e-82	301	anac028;NAC028	NAC domain containing protein 28

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02322	AT1G65910.1	242	59	6	1	213	1	241	63.22	3e-82	301
AfisC4G02322	AT3G03200.1	212	69	3	1	211	1	205	63.68	1e-74	276
AfisC4G02322	AT5G17260.1	157	34	1	1	156	1	157	77.71	2e-74	276

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	7	133	100.3	7.3e-29

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0002230	P	positive regulation of defense response to virus by host
GO:0002237	P	response to molecule of bacterial origin
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003713	F	transcription coactivator activity
GO:0005516	F	calmodulin binding
GO:0005730	C	nucleolus
GO:0005789	C	endoplasmic reticulum membrane
GO:0008283	P	cell proliferation
GO:0016032	P	viral process
GO:0009555	P	pollen development
GO:0009819	P	drought recovery
GO:0010114	P	response to red light
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0031930	P	mitochondria-nucleus signaling pathway
GO:0048759	P	xylem vessel member cell differentiation
GO:0048829	P	root cap development
GO:0070301	P	cellular response to hydrogen peroxide
GO:0071365	P	cellular response to auxin stimulus
GO:0071470	P	cellular response to osmotic stress
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090602	P	sieve element enucleation
GO:1900409	P	positive regulation of cellular response to oxidative stress
GO:1900426	P	positive regulation of defense response to bacterium
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1990110	P	callus formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network