result

Gene information

Detail information of AfisC4G02343

Location

Gene	Chr	Start	End	Strand
AfisC4G02343	chr4	443531027	443532563	-

Sequences

CDS

Protein

Gene

>AfisC4G02343
AAAAAAAATTCTGATAAATCCAGAAAAAATTAACCCAGTAGAAAAATACATAATTGATTTTCCAAATGCGCAGCTTTCATTGTCTTCCAAAAAGTAGTACCAATCTAATACATTCATTCTCCATTAATCATTTTCCAAAAATCACAGTAGAGAAACGCATTAAATTCGCGAAGTTACAACCATTTCCGTACTCTCAACAGACCCTTCTTTCATTTTCATCTTCATCAAAGCTAAAACCTTCTAATGGATCCGAGCGAATTCAAACAAAACCCACAACCCGAAACCCAGACTGGAGGAATTGACCATCCCGAAGCTGCAACCCAAAACCCGCAAACGCTAGCTGTTCTGGCACCCAAACGGAGCTCCACGAAGACGAAGGATCGCCACACGAAAGTAGACGGACGCGGGCGCAGGATCCGCATTCCAACTCTCTGCGCCGCCCGAATCTTCCAACTGACCCGCGAGCTTGGCCACAAATCCGATGGCCAGACCGTCGAGTGGCTTCTCCGTCACGCCGAACCCGCCATCATCGCCGCTACCGGGTCGGGTACCGTACCCGCATCCGCTTTGGTTTCTTCCCAGTCGATGTCCGCTCAAAACCCTAGTACCAACAATTGGAGTGCGGGTTTGTGGGGAGGTTTTAGTTCAGGGTTTTTGAATTCAAATATCAGTAACAATATTGATAGCAATATCAGTAGCAATATCAGTAGTAGCAGCAACAACAATGTTGTTGTTTCCGGTTCCAATAATTTAGGGTTTTGTTCCATGGAGCCTCGGATGATTACAAGGATGAATGCTCCAATGAGCTTTACTTCCATGCTTGCAGATCAAACTCCAGGATTGCATTTAGGGCTTTCACAGGATGATCAAATTGGGGTTACGAACCCAGTTCAAATGAGTCAGTTTTTTCACCAGAGGCAAAATGTTCATGCTGGGGTTAACACCCGTGGCAGTATTAGCGGTGAAGGAACAAGTGCTATTGGTGTCAATGGAGGGCAGTTTCGGAACAAGTTAGTATTGGATATAGGGAAAGTGATCGATTCCAGTGGTTTGAGTCGTTAGTTTCTTTCATTAGAAATACCATGAACTTAGTTCTGTTTTTATTTTGATACATTCTGGAAAATTGTGGAGATGATTAAGTTTTGATTTCAGATTTGAATAAAAATTCTCCGGTAATTGCTGTTCTACTGATTTGTGTTAATATTATGTTAAGGATTGTAGAAAAAAATTTGAATTGTGCATTTTTACATATTTGCAGATTTTGGCTGATGATGAACTAGTCTTCGGATGAGGATTGTGTATCGTCTGCTTTGAAGGTGTGTAGATATTGTGCAAGTTTAAATTTTTGCAATTTCTAGTCAAGTTTTGTTGGCATGGTGGTTGGCTTTGTTTTATAGAACGATATAGCTTATCATTTTATATCATTATACTTGTGAAATATTTGTTCTTTTGTAGAAATATTAAAGCATCAAATTTTTGAACGAGCAATAAGCTTGTTGATATATATGTGCATGTGTTATTTTTAGTATGATATGCC

Functional annotation

Database	accession number	e-value	annotation
nr	PKA63800.1	2.6e-34	Transcription factor TCP20
Swissprot	Q9LSD5.1	3.2e-29	Transcription factor TCP20
trEMBL	A0A2I0B7P0	1.9e-34	Transcription factor TCP20

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G27010.1	42.52	5e-35	144	AT-TCP20;ATTCP20;PCF1;TCP20	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02343	AT3G27010.1	214	87	8	35	222	71	274	42.52	5e-35	144
AfisC4G02343	AT5G23280.1	136	60	2	45	178	40	173	52.94	4e-31	131
AfisC4G02343	AT3G47620.1	83	22	1	27	106	97	179	69.88	6e-30	127

Ortholog group

Species	Genes
Allium cepa	g332752.t1
Allium fistulosum	AfisC4G02343
Allium sativum	Asa4G01813.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	42	144	107.5	8.5e-31

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008283	P	cell proliferation
GO:0008361	P	regulation of cell size
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010029	P	regulation of seed germination
GO:0010229	P	inflorescence development
GO:0010252	P	auxin homeostasis
GO:0031347	P	regulation of defense response
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0048364	P	root development
GO:0048467	P	gynoecium development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16221	TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network