result

Gene information

Detail information of AfisC4G02407

Location

Gene	Chr	Start	End	Strand
AfisC4G02407	chr4	459542137	459543311	+

Sequences

CDS

Protein

Gene

>AfisC4G02407
ATGGAGAAGATAATATGCACCAATAACAGTGGTGGTAGTGGTGGTGGAAGCAGCAGCAGCAGCAACATACAAGAAGTCAGAAAAGGACCATGGACAATGGAAGAAGATCTCATCCTTATTAACTACATCGCTAATCATGGAGAGGGTAACTGGAACACTTTGGCTAAGTCTGCAGGTATATGTATATTCTATACACATTAAATTTTTATAGCTTTTCTTTTACTGATCAAGTATCAATATTGATATTTTTCTTGAATTTATCTATAAGGTTTGAAGTGTACTGGAAAGAGCTGTAGGTTGAGGTGGCTAAACTATCTGCGCCCAGATGTGCGCAGAGGAAATATCACACCAGAGGAGCAGCTTCTTATTATGGACCTGCATTCTAAATGGGGTAATAGGTGAGCTATCTTGCATTTTGGTTTGGTTATTCAGATGAATTCAGGTAGTCTAACTATTTTGTAAATTCATCCCTGAGGTGGTCAAAAATTGCAAGGTAGCTACCAGGGAGAACTGATAACGAGATAAAGAATTTCTGGAGGACTAGAATGCAAAAGAAGCCAATGCAGGGTGAGCATTTTGATAACGCAGGGTGAGCATTTTGACTCAATTTAAGTATGAAGTTGTATTGAGGTGAACCCCAAGTATGGGAGGCAAAACCTATACTAAAACACTCCATATACTTATCAGATAAATGTCAAGTATTACAATATCTCAAAGGGGTACCTTTGTCTTTACAAGAATCAAAATGTTATTTGACCAAAATAGGATTATGACCATTTGAGTAGTTTGGTAAGGCAATCGAAACAAGTTTATCAATAAGACCTGAAGCCATTAAGAAATTATTGAAGCTAGTCAATTGATTAAAAGGTATTGCTAACCCTCCTTTTTTATCATTAGCATTTAAAGCATTAATTTTGCTTGTTGATTTCAAATAAGATCATATAAAATTAAGAAAGCACGTATTTGGCTTAACACTGATATTTGGATGTTTCAAATACCGCATAGTAATCAAATCCTTAAACAAATTGGTATAATTTATGTGCCTACTGCAGATGAATTAAGTGGAACTGCATTTCAAGTTGAGCTAATTCATGGAATGCTTATCAGATGCTATTGGTTCGACGGTAGCATGGCCTACTGCGAATGTTAGTGTGGACTCAACTTCAGCAGTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	AMO43680.1	3.9e-35	R2R3-MYB transcription factor
Swissprot	P81391.1	5.3e-37	Myb-related protein 305
trEMBL	A0A8U0AUG0	2.8e-35	MYB305

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G27810.1	84.34	7e-38	151	ATMYB21;ATMYB3;MYB21	myb domain protein 21

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02407	AT3G27810.1	83	13	0	25	107	19	101	84.34	7e-38	151
AfisC4G02407	AT5G40350.1	83	12	0	25	107	16	98	85.54	8e-38	151
AfisC4G02407	AT3G01530.1	91	23	1	26	112	25	115	70.33	6e-33	135

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	28	75	56.8	1.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009585	P	red, far-red light phototransduction
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048629	P	trichome patterning
GO:0048765	P	root hair cell differentiation
GO:0051555	P	flavonol biosynthetic process
GO:0080086	P	stamen filament development
GO:0080091	P	regulation of raffinose metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network