result

Gene information

Detail information of AfisC4G02474

Location

Gene	Chr	Start	End	Strand
AfisC4G02474	chr4	470673624	470676136	+

Sequences

CDS

Protein

Gene

>AfisC4G02474
AAAATCTCTCATCATCCAATACATACATACATACATAATCAGAATAACACAAAGAAATGATGCAAGCAGAGGTAGATGAGCAGTTGAGAACGGTGAAGGCAGAGATGTTAGTTCATCCATTATGGAACCAATTGCTAGGAGCACACGTGTCATGTCTACGTGTAGCCACACCTGTTGATCATCTTCCTGTTATAGAGGCACAGCTTGCAAATTCTCATCATGTCCTCGAGTCTTATGTATCGGGCTGCCGGGCTTTTATGTCTCACCAGGACAAGCAAGAGCTTGATGTTTTTCTTGTTAGTATACATCTAATCCTTTTTTTTTCTTCTTCTATAACACAAGGATCTATATCATTTGGACTATGGGGCTTATGATATATAATTCTTATCCAAAGTACATGTTTTATGCTACCATTTTCGAACTCCTCTGATTATTAATATTATTATTAAAGAGAAAAGAAAAGAAATAAATTTGCTTCAACAAACAAACAGTCTTATCAACATTATGAGCAGTCAAGAGTAGAAGTATTTGGACTAATGTGAAGTGCAAATTGTGCAGGCACAGTATTTGGTAGTTTTGAGTTCGTTCAGGGAGCAGTTGCAGCAGCATGTGGGTGTCCATGCCATGGAAGCTGTGATGGCTTGTAGAGATATTGAGCAGTCATTGCAGGAACTTACTGGTATTACTTTATTTTATCAGAAACTACTCAAGTACACAACCAACTGTTTTACTGGTGTTTAATGATGGTTGGTATCCATTCAGTTTTAATCTATTTTGAATTGGTGTTGTGTAATCTTTAAACTAAACAGTTGTACATAATTTAAAGATGATGTACCAGTTTTTTAATCTACTTTTTTTTAATATAGAAACTAGTTGCTGTTAAGGGAAGATGAGATGTTATAATTTATCCATGTTAGGTGCCAGATGTAGGTTAAGTTTTCTATTTATTTTCTTCATTTGACACGTTTTTATGCATAGATACAAAATTCTAGCAGTCTCAAAAGATTGCTCATTTCCAGATAAACCTACTTGCTAATAACTTTATTTTTGCGATATGCATTTTGAAACCCTTCAAATGGTTTACACTTAATACACTCACTATACATAGAAAAAGCTTGTAAAAGGGCTATTGTTATGGTTTTCAGGAGCAAGGCTGGATGAAGGAACAGGAGCAACTATGTCCGAGGACGAGGATGAGCCGCTTCACACCGAAATGCACAACTTGGATGGTTCAGGTTTTGACCCTGGAAACAATTTCGACATGATGGGCTTTGGGCCTCTGGTTCCCACTGAGTCCGAACGCTCCTTAATGGACAGAGTCAGACAAGAACTCAAACTCGAACTGAAACAGGTTACTACAACTTCTCATACATTGCTAACTTGTCAATGAACTATCCATGTTACCCTTAAAAATTGTTCCACATATATCAGTTAACATGATGAATCTTATGTAGCTATTACATGATAATAACTGGTGGTATAATGGACGGATAAGATCATCAAATGTGCCATTTTTCAGAGTCAATAGATCTAACGGTAGCCATTATGACGTCTAATAGTGGAAACCTATGTAAATTTCATAGTTTGACACAGATTCTGATTACTCATAGAAATGTTTGCTGACAAATAATTTGAACTACAGGGTTTTAGGTCACGAATAGAAGATGTAAGAGAAGAGATATTAAGAAAGAGGCGAGCGGGGAAGTTGCCTGGGGACACAACGTCTGTTTTGAAGCAGTGGTGGCAACAACATTCCAAATGGCCGTACCCAACTGTAACTGTTTTATATCGTTTTCAAATGCACATTACATAATTAATATATGAAAGAGAAAACCGAATTTTATGTCAGTAACAAAGATAATTCTTTGCATTATTTCACAGAAATAACCAAAGTAATCTTAATGGGGGTAAATCCAGAATTAATCCAAGTAGTAACTGAGTAGTAATATTTGTTAATTGATCGTATACAATATTTTATATATAAATTTGCAATGTACGTACTTAAGACTAAATAATGTGTGGTGAAATGCAGGAAGATGATAAAGCTAGGCTAGTCGACGAGACAGGATTGCAACTGAAGCAGATAAATAATTGGTTTATAAATCAGAGAAAGCGCAACTGGCATAATAACTCCTCTCAATCAACTTCTAAGTCTAAACGTAGACGATAGGATCACAAATTATGACCTTTTTACATTGGTTTTTACATGTATGTGCAATGAATCGAGTAGAACTCACAAATTAGCTATGCAGCATTATAATTGCAAATAATTGCCTTCTTTCTGTAATTTGGTTTTAACTCTATAAAGTGTTTTTATAACAGCAATACTAACATTAACTTGTTTGAAAGTTGAAAATAGAACATCAATTTTCAGAAGAAAAATCTCCCTTTCTATCGTATCTCCATATTAGTGATGCGAGAGGGGAACATGGCAAGCAATATGAAATATAATTATTTTATCGTTTTCCAAGAAGTGGAGGATGTTGAAATTACACGTTTAAGAATACGCCGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010933995.1	4.7e-108	homeobox protein knotted-1-like 3
Swissprot	P46606.1	4.3e-106	Homeobox protein HD1
trEMBL	A0A6I9RX58	3.4e-108	homeobox protein knotted-1-like 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62990.1	71.38	8e-112	399	IXR11;KNAT7	KNOTTED-like homeobox of Arabidopsis thaliana 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02474	AT1G62990.1	276	72	4	4	277	20	290	71.38	8e-112	399
AfisC4G02474	AT5G11060.1	267	72	4	14	277	124	382	68.91	5e-102	367
AfisC4G02474	AT5G25220.2	267	77	3	14	278	160	419	67.79	5e-101	363

Ortholog group

Species	Genes
Allium cepa	g506797.t1
Allium fistulosum	AfisC4G02474
Allium sativum	Asa4G01931.1
Arabidopsis thaliana	AT1G62990.1
Oryza sativa	LOC_Os03g03164.1; LOC_Os03g03164.2; LOC_Os03g03164.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03790.10	KNOX1	Family	12	54	47.6	9.4e-13
PF03791.10	KNOX2	Family	70	120	58.0	5.1e-16
PF05920.8	Homeobox_KN	Family	222	261	63.4	1.2e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0009416	P	response to light stimulus
GO:0009722	P	detection of cytokinin stimulus
GO:0010089	P	xylem development
GO:0010192	P	mucilage biosynthetic process
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0071345	P	cellular response to cytokine stimulus
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network