result

Gene information

Detail information of AfisC4G02552

Location

Gene	Chr	Start	End	Strand
AfisC4G02552	chr4	489711273	489712397	-

Sequences

CDS

>AfisC4G02552
ATGAACGTGAAGATGAGTGTAAAATGGGCATTAGATGTTTACGACCCACCTGTCACCTCTTCATCTCACACGATCAAGGGACGACATCGTCGTCACCACCACTCCTACAACCATCACCCGAAATCAAAGAAAGACTGCTACACTAGTAGTAAGCATAGCAAAGAAAAGTCATCAAGAGGTAGTAGCAAAGAAAAGCATTCACATAGTAAGAGCAGCAGACACAGTGCCTCAACAATTCCTCAGTTATCAAGGAAAGCAATAGTGAGCACCTACATTGAACGAAAGGTTGAGCCTCTTGATAAGGAAGTTGCATTAAACACATACGATTTTCAGAGAAGGAAAAAAATCATGGAAAATGATCAGGAAGAATCAGAAAATCCAGACCTTTTAGACTGGTTCGATGACCCGCTCCAATTTCTCCCATCATTTCTCGAAGATCAATACTCGATATCAGACAACATCCAAGATATGGATTGGTGGGCTGACCAACCATTGGACCCAAACCAGGACAATATCTTCGAGCTCCCAACTGCAGCTTTAGCCATAGACTCTCTAGTAGAACCTACAAACATGCCTCAAGATTCATCAATAGCTCAGCATGAGGCCTGCAAAAAAAGAAAGAGGAATGAAAAGGGCAATACCGACGCTAATTTACCAGAAAGCAGCAGCATGAAAACATCAAGTAAAGCTAATGGAAACAATTCTTCTAACAATGGCAATAGCAAAGAGGTGAGATGGGCCGAACAACTGCTAAACCCTTTAGCAGCAGCAATTGAATCTAACAATTTGTCATGTGTTCAGCATTTGTTTTATGTTATGCAAGAGTTAGCATCGGCAAACAGTGATCCTAATCACCGCTTAGCTTACCATGGCCTACGCGCCTTAAGTCAACATATTGATGATAACCTTACGCATGGTGACAGGAACCATACTCCACCGCTAACTTTTACCACCGTTGATCCAAAAACATTCCGCTCATCCTTGATAAAATTCCATGAAGTAAGTCCCTGA

Protein

Gene

>AfisC4G02552
ATGAACGTGAAGATGAGTGTAAAATGGGCATTAGATGTTTACGACCCACCTGTCACCTCTTCATCTCACACGATCAAGGGACGACATCGTCGTCACCACCACTCCTACAACCATCACCCGAAATCAAAGAAAGACTGCTACACTAGTAGTAAGCATAGCAAAGAAAAGTCATCAAGAGGTAGTAGCAAAGAAAAGCATTCACATAGTAAGAGCAGCAGACACAGTGCCTCAACAATTCCTCAGTTATCAAGGTTTCCCACAACTCTTCATTTGAAATTACATATGCAATACTTGTATGTACTGTTGAGAATAGTTGTTTTTACATCTACTTGTTCTTAATCCCGGGTTACAACACTTGAATGTAGGAAAGCAATAGTGAGCACCTACATTGAACGAAAGGTTGAGCCTCTTGATAAGGAAGTTGCATTAAACACATACGATTTTCAGAGAAGGAAAAAAATCATGGAAAATGATCAGGAAGAATCAGAAAATCCAGACCTTTTAGACTGGTTCGATGACCCGCTCCAATTTCTCCCATCATTTCTCGAAGATCAATACTCGATATCAGACAACATCCAAGATATGGATTGGTGGGCTGACCAACCATTGGACCCAAACCAGGACAATATCTTCGAGCTCCCAACTGCAGCTTTAGCCATAGACTCTCTAGTAGAACCTACAAACATGCCTCAAGATTCATCAATAGCTCAGCATGAGGCCTGCAAAAAAAGAAAGAGGAATGAAAAGGGCAATACCGACGCTAATTTACCAGAAAGCAGCAGCATGAAAACATCAAGTAAAGCTAATGGAAACAATTCTTCTAACAATGGCAATAGCAAAGAGGTGAGATGGGCCGAACAACTGCTAAACCCTTTAGCAGCAGCAATTGAATCTAACAATTTGTCATGTGTTCAGCATTTGTTTTATGTTATGCAAGAGTTAGCATCGGCAAACAGTGATCCTAATCACCGCTTAGCTTACCATGGCCTACGCGCCTTAAGTCAACATATTGATGATAACCTTACGCATGGTGACAGGAACCATACTCCACCGCTAACTTTTACCACCGTTGATCCAAAAACATTCCGCTCATCCTTGATAAAATTCCATGAAGTAAGTCCCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	RZR82528.1	2.4e-29	hypothetical protein BHM03_00008977
Swissprot	A1DQP9.1	2.2e-24	Protein NODULATION SIGNALING PATHWAY 1
trEMBL	A0A804KXD0	4.2e-28	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13840.1	34.71	1e-22	103		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02552	AT3G13840.1	242	118	9	122	336	4	232	34.71	1e-22	103

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	248	336	29.6	2.9e-07

Gene Ontology

Accession	Ontology	Name
GO:0006351	P	transcription, DNA-templated
GO:0042446	P	hormone biosynthetic process
GO:2000032	P	regulation of secondary shoot formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network