result

Gene information

Detail information of AfisC4G02642

Location

Gene	Chr	Start	End	Strand
AfisC4G02642	chr4	506995953	506997546	-

Sequences

CDS

Protein

Gene

>AfisC4G02642
TAGAACCTAGCAATAGCTGATTTCTATTACTACCACCTCCATTCATTTCTTCTAACTTCTTTTACTTGTTACTTTCTGCAGAGAATGATCATTCCCAATCCTACAACAATATCAACAAATACTAACCTTCCTACATCCTCGGCAATTCATGAAAACAAAGCCCTTATCATGCAGAAACAAGATCAGCTTAAATGCCCACGTTGTGATTCTTCCAATACAAAGTTCTGTTATTACAATAACTACAGTTTGTCGCAGCCTCGACACTTCTGTAAAGCTTGCAAGCGTTACTGGACTCGTGGTGGCACCTTACGCAATGTGCCCGTAGGCGGTGGAAGTAGGAAGAACAAGAGAGTCAAGAAAAACCAACAAAATAGCCTCAAAACAAATTCAAACCCTAACCCTAGCTCCAATCCCATTAATCCTAATCCTGATCCTATTAATTTGATCTCTACCTCTTCAGCGGAGAATAATTCATTGTTTTACAGTGCATATGATAATATTAATCTTGTGCAGCCTCAGTTCAGTTCTCTTGGTTTAGGAGGATATATGGCAAATCATAATCCTAATTCTAACCAGTCATTTGGGCTGAATAATATTAATCTCAATAATATATTGAGTAATGGATACTCGAGTTATGGATCAGAAGCAGCGGCATCTCTCCTAGTCTCAAGCTTGAAGCGACCAAAGAATGAACACTCGTTGTTTCCTAACGAGGGTTGGCAACAGTTAGGTCAAAATCAAAGCAGTCTGGTTGGAAATGTTGATAGCGATAGCATTGATCAATGGCAACCTAATTATCAATTTGGTCAGTCTATAATCTCTAGCACATCTAATAATATCAATGGTTCAAGTGATTCATATATGTATTGGAATTCGGCGATGGGAAGCTTGGGTTGGGGAGATGCTATGAATTCATCAGTAGCCCATCTAATCTAGTTATTCAAATCAATCATATGTTTCCAAAACAAAACAAAAAAACAAAAAACAAAAAAATCTTTAACCAAGATCTCTTCTTATTCATACTTTTTCTTCGATACTGGGGGTATACAAAAATTATACATAAAATGGGGTATTGGATAGGAGGATTCAAGGTGATGATGCGGAAGTCTTAGTCGTGATCATCGAAAATATTTAGGGCTTGTGATACTGCATATTTTCGACTTTCAAGCATTTCAGATGTGAGAATCAGATGATGATGACAAGGAGCAAAAAGAAGTATATATTTTCGACTTTCAAGCATTTCAGTCATGGTTTCCATTGTAGGTAGGTTCTTAATATTCGGTTAGCTTCAATCTAGCTATTAGTAAGCATTAGTTCTTAATTGATTACTTTATTTCTGTGTGTTTTTTATAAGAAGGAAGATGGAAGGTATAGAATAGTATCAAAAGTGTGAGATTTTCACTTCAATAATGTGTGTTCTAGTGCTAAATGCTTGTGATGCTTTTACATTAATGTAACTTTATCAATACATGTTAAACTCATGTAGGGACTAGTTTTTTTTTTTTTTTTAACCTCCATGTCTCTGTTTGGTTATGGTTGAAATTTATCATATCAATTTGAACTCTCTATGCAATCGATTTAAAACTCGTGCAAG

Functional annotation

Database	accession number	e-value	annotation
nr	ATG31849.1	2.4e-128	cycling dof factor 2, partial
Swissprot	Q94AR6.2	9.9e-26	Dof zinc finger protein DOF3.1
trEMBL	A0A291FGE3	1.8e-128	Cycling dof factor 2 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G28310.1	94.83	3e-30	129		Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02642	AT1G28310.2	58	3	0	35	92	41	98	94.83	2e-30	129
AfisC4G02642	AT1G28310.1	58	3	0	35	92	27	84	94.83	3e-30	129
AfisC4G02642	AT5G60200.1	75	21	1	35	109	55	127	69.33	1e-28	123

Ortholog group

Species	Genes
Allium cepa	g269293.t1
Allium fistulosum	AfisC4G02642
Allium sativum	Asa4G02041.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	33	89	116.1	5.2e-34

Gene Ontology

Accession	Ontology	Name
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0010227	P	floral organ abscission
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network