result

Gene information

Detail information of AfisC4G02709

Location

Gene	Chr	Start	End	Strand
AfisC4G02709	chr4	519187657	519193510	-

Sequences

CDS

>AfisC4G02709
ATGAGAGAGAAGCTGTGCGCTTTTGCAGCATTGTTATGCATTTGGGTTTTAAATCTAAGTTCCGTAAATGGAACTACTGACCAAGCCGATGTCTCCTCTCTGAATACGTTGTATAGTAGCCTGAATTCTCCCGGTCAATTGAATGGCTGGACTGCAAGTGGTGGGGATCCATGCAGCCAATCCTGGAAAGGCATTACATGTTCTGGTTCATCAGTCACTGAAATCAAATTGTCCGGTTTGGGACTTAGTGGTACATTAGGCTACAACATGGATTCTATGAAATCACTAGTTGAGCTTGACATGAGCAATAATAATCTTGGAAATGGAGGTCAAATTCCATATGGTCTTCCTCCAAATCTGAAGCGGCTAAACCTTGCTTCCAATCAGTTTACTCAAGGCATTCCATACTCAATCTCTCAAATGAGCTCCCTTGAAAATTTAAATCTTGCTCACAATCAACTCCAGGGCAATTTATCTGATATGTTTGGGGGTCTCTCCAACCTTAAAACTATGGATATCTCCTTCAATGCAATTACCGGTGATCTGCCCCCGAGTTTCAGCAGTCTATCAAGACTGACTGCACTTTATTTACAGAACAATCAGTTTACCGGTTCTATAGATGTCCTTGTTGGTCTTCCACTCACTGATCTAAATGTAGGAAACAACCGTTTCTCTGGATGGATCCCTAACCAACTAAAAAAGATAAACAATCTTCAGACTGATGGTAATTCGTGGAACTCGGGTCCTGCACCTCCTCCTCCACCATTCTCAACTCCTCCAGCAGGCCGTAAAACTAATCCTGGACATAACTCTAATGGTGGAAATAGTTCACCGAAAAGTAAGGGTGGAGGGAAGAGTTCAGGAATCAATGGTGGAGCCATTGCAGGTGTTATCATTTCTGTTTTGGTTGTTGGTGCAGTAATTGCATTCTTCTTGGTGCGCCGGAAGAAGAAGAAATCATCACTTGGAGGAGCAGCTCATGAATACAACGAGCCTCTTACACCTCTTGCTTCAAATGAAGTTAAAGAGATGAAGTCAATTCAATCATCATCAGCAGTAAACACAACAGCTTTCACACCTATCGTCGCTCCTATCAACCTGAAACCTCCTCCAATCGATCGATACAAATCAAACGAAGAAGATGAGTTATCATCCGACAATAAAGCTGTTGTGAAGAAAACAAAAGCAGCTCCTCCAGTAAAAGCAACTGTGTACTCAGTAGCAGATCTTCAAGTTGCCACTGACAGTTTCAGTGCAGACAATCTCATCGGACAAGGCTCCATTGGACGTGTCTTCAGGGCTCAGTTCAACGATGGGAAGATTCTTGCCGTGAAGAAAATAAACTCTTCTGCCTTACCCAACAACAATTCATCGGATGCTTTCATTGACATCGTCTCTGACATTTCTCGCTTGCACCATCCAAATTTGGTAGAGCTTGTAGGCTACTGCTCCGAACATGGACAACATTTGCTCGTTTATGAGTTTCAAAAGAATGGATCATTGCACGATCTTCTGCATATAAACGATGAATATAGCAAACAGTTGAACTGGAACAGTCGTGTCAAAATTGCACTTGGAACTGCTAGAGCATTAGAGTATTTGCATGAAGTTTGCTCGCCGTCTGTTGTTCACAAAAACTTCAAATCAGCCAACATTTTATTAGATTTGGAGCTGAACCCTCGTTTGTCAGACTGTGGACTGTCCACACTCATTCCTGATGCTGAATTTCAGGCTACGGGATACAGTGCCCCTGAGGTAGCAATGTCTGATCAATATACGATAAAGAGCGATGTTTACAGTTTTGGTGTCGTCATGCTTGAACTTTTGACTGGGCGGAAGCCCTTTGATAGCACAAGATCATGGTCCGAGCAATCATTGGTGAGATGGGCAACTCCACAGCTACACGATATCGATGCATTGGACAAAATGGTGGATCCAGCCTTGAAGGGTCTTTATCCTGCCAAGTCTTTGTCTCGCTTTGCTGATGTCATTGCCCTTTGTGTTCAGTCTGAGCCAGAATTCAGGCCACCAATGTCAGAAGTAGTACAAGCGTTGGTTAGGCTGGTGCAGAGAGCAAACATGAGCAAGAGAATGCATGGCGGAGAAGGCCACGATTCCATTCGAAGAAGTGATGATAACGATACACAAGATTATATGTGA

Protein

Gene

>AfisC4G02709
CTTATTCTCGCCAGCTAAACTTTCCTAATATGCGGTGATTAAACAATGGCAAAATATTCAGAAAGAACATAATTTTATCATTAATAATATAAATATAAATATTTGTATTATTTATAGCAAGCTAAAGAGAAAGAGGCAGCGAAAGAAATGAGAGAGAAGCTGTGCGCTTTTGCAGCATTGTTATGCATTTGGGTTTTAAATCTAAGTTCCGTAAATGGAACTACTGACCAAGCCGATGGTAAAGTTTTATCCTTTTCTTTAGTTTTTCGCTTTTTCGATCTTTTCATATGATTTTTTTTGTTCTATTGTGACTGAATAAATGAAGAATATTCAGATACTGAGTTCAGCTCATTTTGCTGTTTATGGTTTAAACTGCACTTCTTTTGCCCTAATTTGGATTCAAATCGAGAACCTTATTTTGTTACAAGTATTTTGTTCAGTATACATGTATTAATAAATGTAAATGAGCAGTACGCAAGCATCGAATGGATCTTAAAGAATTCGATACCAAAATGTAATAATTTCAAAATTATGGGTAGAGGAATTATTTGGACTGTGCAGACTTTTCAGTACTGTAAATACACAAATTAATGTACTTTGAATTATCGATACATTATCATCTCTGAAAATGAAAATAATGCATTCCAGATCTAACCAGACTCATGCATCCTATTATTTCCCTGTTTGATACAGTTTTAAATTACTGACTGTGATAATGATGCATGCAGTCTCCTCTCTGAATACGTTGTATAGTAGCCTGAATTCTCCCGGTCAATTGAATGGCTGGACTGCAAGTGGTGGGGATCCATGCAGCCAATCCTGGAAAGGCATTACATGTTCTGGTTCATCAGTCACTGAAATGTAATCTTTTTATGACTTTATTACTGTTGTTATATGCTTTCCCTCTTACACTATGTTGGGATTTCTTCTTTTACTCATGATGTTCTTGCAATTTATTCCAGCAAATTGTCCGGTTTGGGACTTAGTGGTACATTAGGCTACAACATGGATTCTATGAAATCACTAGTTGAGCTGTGAGTTTCTTAATTCTTTTTGAGTTTCGACCACTTCTATCCTCTTTAGAGTTACTTTGAAGTTTGATTTAACTCTATGCATATATATGGGGGCAGTGACATGAGCAATAATAATCTTGGAAATGGAGGTCAAATTCCATATGGTCTTCCTCCAAATCTGAAGCGGCTGTAAGTTGACATGCAAATGATATGCTGATTTAAATTGTTTGTTTGCAGATATATGTTTGTTATAAGTACATGATTTTTGCAGAAACCTTGCTTCCAATCAGTTTACTCAAGGCATTCCATACTCAATCTCTCAAATGAGCTCCCTTGAAAATTTGTAAGTACCACTCTCAATCACTATTACTAATTCTCTTCAATGAGCTAAATCGTTGCAATTTATCAATTTAGAAATCTTGCTCACAATCAACTCCAGGGCAATTTATCTGATATGTTTGGGGGTCTCTCCAACCTTAAAACTATGTAAGTAAAAACTAAAAAAAGAAAAAAAAAGGAGACTTGCTTGCAATCAACTAACTAGGTGACTTAGTATGTTATTTATCTAATAGTTTTGATTGTCTAATTCAGGGATATCTCCTTCAATGCAATTACCGGTGATCTGCCCCCGAGTTTCAGCAGTCTATCAAGACTGACTGCACTGTAAGAACTTTATTTTAGCAGTACAGACTTATATTATAATCAATTGCAAGGTGGTATTAATCTAATGCATGATTCATACTACTGCAGTTATTTACAGAACAATCAGTTTACCGGTTCTATAGATGTCCTTGTTGGTCTTCCACTCACTGATCTGTAAGAAGAAACTATCCTAATGTTAATAAATATTTACAGATTAAAAAAAGAGTTCTTATCAGAATGTGCTAACATTGCTTTCTACGATTCTAGAAATGTAGGAAACAACCGTTTCTCTGGATGGATCCCTAACCAACTAAAAAAGATAAACAATCTTCAGTGAGTACCACCAACCTCTATTATGCTCGATCATTTCAGCATCTGTATGTTTTGGATTAAAATTGTAAATCGTAAAGTTTAAACTTCGGATCGAAAATGGATTTTAAATTGTGAATCATAGATTCAAAGGGTTCATATTTTAACAATTGTATATGCTTGTATGCTAAATGTTTTGCTCTACCTACATTATCAAATAATATTGAACTAAGTAAAACATTGATTCTTCTTTCCTTAATAATAAATTATATTTTAAGATTAGTCTTGATGCTTTAGCTTCTACATCTAACTGTGAAAATGTTTCTCTCTCTCTCAGAATGTTTATTTATATTTGTTCAGAAAAACAGTCGAATTCGGATTGTAGATTCAAACAAGTGTTTTGATATATTTCAGAATATATATATTTGTATATTTTTTAATAATGGATTGAATAAAAAATTTCAACTGTGATTTTAGGTAATTTGAGCCGACTTGCTGAATAATTCTATAGGTAAAAGGTGTTGTGATATTCAAAACCAAAGATATAATTTACTAAATTAGATCAATGCCTTTATATAGGCTACAAACATACTTTAAGTCAAACATAACTGGTAATGGCTATAATTAAGCCACTTAACAACCACTTCTAACATATAAATAGGACACATGTTTTCACTTATTACACACTAACTAATTACACTTCTAACAAAATTGAGAATCAAACAATCATCGGAGAGGATCGATTTGAACGGGATTTAAACCATAAGATTTCAAGATTTTTTTTACGACAATCAATCATATCATTAATTATACAGGACTGATGGTAATTCGTGGAACTCGGGTCCTGCACCTCCTCCTCCACCATTCTCAACTCCTCCAGCAGGCCGTAAAACTAATCCTGGACATAACTCTAATGGTGGAAATAGTTCACCGAAAAGTAAGGGTGGAGGGAAGAGTTCAGGAATCAATGGTGGAGCCATTGCAGGTGTTATCATTTCTGTTTTGGTTGTTGGTGCAGTAATTGCATTCTTCTTGGTGCGCCGGAAGAAGAAGAAATCATCACTTGGAGGAGCAGCTCATGAATACAACGAGCCTCTTACACCTCTTGCTTCAAATGAAGTTAAAGGTTACAACTTGTATCCATTGCATTATATTTGTTATAGCAAAATATTTGTGGTTGGTCATTATCAGTTTGGCTGGTATGGTAATGGTTATCTTTACCAATATGGAAAAACCATTGCCATGCCGACAGATTTAAAATGAAAACCAATCAACACTGGTAAACAGTGACAGACACGCCAATATTATATAGAGCAGTGATTTGGATTAGATGAGTTATTGGTAAATTCGATCAACACCACTGCCCCAGTGGTTAGGCACTCCGACTTTGATGTGAGAGGTCACAAGTTCGAAACTTGCGTAGCATGATTCGAATCACATATATCGACATGTAGTATGATGTATATCACCTAAGACTTGTAGTACTAATATGATTACCAGTATCCAATTTCAAAAAGAAAAGAAAATAGTTATTGGTAAATTCAATGTTGCTGATGATTTTGATATTTTGTCACTGCTAATTTCAAGCCCACTTTGGTAATTTATCTTTATTTTACCAATAGTATTGGTATACTAGTTAAATATGGGACAAATTTCAGAAATAAACTTCCAGAAAATTCTTATGTCTATCAGTCAAAACTTATTAAAAATTATGTATCGTTTTCCACTTTGAAAATGCACATCAAAATGTACATGCGCATTTTCAAAGTGGATATATACAATATTAAAAACGATGCCTACTTTCAAATTTTTCTCTCTTCTGTAAGTCAATTTCTAAAACATATCCTTAAATTTATTGTTGGTAACTGATAGGTCGGTATTGATATGTAGTAATAAATTTACCAATACCATGACAGTCCCTAGTCTTTTCCTTCTACTATGCTCAACATGTTGTCTTACTCTGTACTATAATTCTTACCTTTACCATTTGAAATTCATAGAGATGAAGTCAATTCAATCATCATCAGCAGTAAACACAACAGCTTTCACACCTATCGTCGCTCCTATCAACCTGAAACCTCCTCCAATCGATCGATACAAATCAAACGAAGAAGATGAGTTATCATCCGACAATAAAGCTGTTGTGAAGAAAACAAAAGCAGCTCCTCCAGTAAAAGCAACTGTGTACTCAGTAGCAGATCTTCAAGTTGCCACTGACAGTTTCAGTGCAGACAATCTCATCGGACAAGGCTCCATTGGACGTGTCTTCAGGGCTCAGTTCAACGATGGGAAGATTCTTGCCGTGAAGAAAATAAACTCTTCTGCCTTACCCAACAACAATTCATCGGATGCTTTCATTGACATCGTCTCTGACATTTCTCGCTTGCACCATCCAAATTTGGTAGAGCTTGTAGGCTACTGCTCCGAACATGGACAACATTTGCTCGTTTATGAGTTTCAAAAGAATGGATCATTGCACGATCTTCTGCATATAAACGATGAATATAGCAAACAGTTGAACTGGAACAGTCGTGTCAAAATTGCACTTGGAACTGCTAGAGCATTAGAGTAAGTACAAATTTTTGTTGTTTTCAAAAGTTTGCCTTGTTATTTATTTTCAAAACATTGGTGATTTCAGGTATTTGCATGAAGTTTGCTCGCCGTCTGTTGTTCACAAAAACTTCAAATCAGCCAACATTTTATTAGATTTGGAGCTGAACCCTCGTTTGTCAGACTGTGGACTGTCCACACTCATTCCTGATGCTGAATTTCAGGTACCTAGTAATGAAGCATACTACTTACTACTTAACTATTATACAGCAGTCTAATATCATATCATGCACCAGATAGATTAAAATTGAAATTGACTGTAATTATCATCACCAGGCTACGGGATACAGTGCCCCTGAGGTAGCAATGTCTGATCAATATACGATAAAGAGCGATGTTTACAGTTTTGGTGTCGTCATGCTTGAACTTTTGACTGGGCGGAAGCCCTTTGATAGGTAAAAAAAGAAAAAGAAACATGTGTTCAACATGAATATAGTTTCAAGCTTGCAAATGAACATAAATAAATGACAAGTATAATTTCACAGCACAAGATCATGGTCCGAGCAATCATTGGTGAGATGGGCAACTCCACAGCTACACGATATCGATGCATTGGACAAAATGGTGGATCCAGCCTTGAAGGGTCTTTATCCTGCCAAGTCTTTGTCTCGCTTTGCTGATGTCATTGCCCTTTGTGTTCAGGTACCTACCATCTCCACATGTTATTCATAACATACTTCCTTTCATAGTTATAATTCATAGTAGTTAAAAGGTATGAAATAATGGGTTGTACTTGACAGTCTGAGCCAGAATTCAGGCCACCAATGTCAGAAGTAGTACAAGCGTTGGTTAGGCTGGTGCAGAGAGCAAACATGAGCAAGAGAATGCATGGCGGAGAAGGCCACGATTCCATTCGAAGAAGTGATGATAACGATACACAAGATTATATGTGACGATAGTATCTACTACTTGAATGTGTTTGAAGTGAATGTACCGTGATTTCATTTGCATTTACTAGCTTTCTTAATTCTCTCAACCTTTGCTTCCATTTCTTTCTTTTTTTCTTCTGTAACATCGTAATCAGATTCTTTTTTTAAGGTAAGCCACACGTATATATATGGATTTGTATTGAGCACGCATGTAACTACAAAATAACGATACGAGACTTTCATTTATGCCTGGATGATTAACTCTCCATCCAAGTCGTTCCTTGATTTCATTATACTGGGCTAAGAATGGTAATGAACTAATGCACATGTAAGAAGACTTTTTGTTTGGTGTTTGCATACTGCTGGGAAATGAAAAATTTTCAAATCCTACATGAAACTGAGTGGATGGAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274768.1	1.7e-226	protein STRUBBELIG-RECEPTOR FAMILY 6-like isoform X1
Swissprot	Q9C8M9.1	4.7e-173	Leucine-rich repeat receptor kinase-like protein SRF6
trEMBL	A0A5P1EHJ8	1.2e-226	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G53730.1	62.33	0.0	792	SRF6	STRUBBELIG-receptor family 6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC4G02709	AT1G53730.1	730	253	15	1	719	1	719	62.33	792
AfisC4G02709	AT1G53730.2	731	253	16	1	719	1	720	62.24	788
AfisC4G02709	AT3G14350.1	712	254	12	1	697	1	702	60.81	774

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	28	68	34.5	1.6e-08
PF13855.3	LRR_8	Repeat	95	154	27.8	1.5e-06
PF13855.3	LRR_8	Repeat	160	202	33.7	2.1e-08
PF07714.14	Pkinase_Tyr	Domain	420	685	135.4	1.9e-39

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000902	P	cell morphogenesis
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0005576	C	extracellular region
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004702	F	receptor signaling protein serine/threonine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006979	P	response to oxidative stress
GO:0007623	P	circadian rhythm
GO:0009506	C	plasmodesma
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0010059	P	positive regulation of atrichoblast fate specification
GO:0010063	P	positive regulation of trichoblast fate specification
GO:0010071	P	root meristem specification
GO:0010305	P	leaf vascular tissue pattern formation
GO:0019901	F	protein kinase binding
GO:0042127	P	regulation of cell proliferation
GO:0046777	P	protein autophosphorylation
GO:0048366	P	leaf development
GO:0048481	P	plant ovule development
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network