result

Gene information

Detail information of AfisC4G02740

Location

Gene	Chr	Start	End	Strand
AfisC4G02740	chr4	523702908	523706644	-

Sequences

CDS

Protein

Gene

>AfisC4G02740
AAAGGGGCCTAAATGCACACATCACTCACATAACGAAAGGTGAAAGAGGATCAAGAGAGGAGGGAGAGAAAATGTGGTGCCAATCATGTAGAGAGGAATACGTAGAATTAGATGCAGGAACCTGCAAAGAATGCTATGAAGAAGCAAGCGAAACAGAAGAAGAACTCAAGCGCGAAATTGAAGATCTCAAATCCAAAGTTTCTTTCCTCCGCCTCAATTCCCCATTAGATTCCAATCTTTTCTCGTCCTCTTCCGCCGCTGCCGATGTTTTCCTTCACGCCGCCGTTGCCTCTGACGGCGTCTCTTCCGTCCCCGCTGTTCCAGCTCATCGAGCTGTTTTGGTACTTTTTAATCCATCTTTTATGTATTCCTATTTTTGCTGTTATTTATTTTATGTTTTAGATGATTGACTGGTCGACTGGTATGTGCTGGTCTTTGATCGTTCTGATTTGGTGGTTGATTTGGGAGTTAGGGTTTTTGAAATTTAATGGCGTAGTGCAAATGAAATGAGTTTCGCTAGTTGGACACATGATTAGCAATTTTGTTTCTAGGCCTATCAACGGATGCTTTCGGATGTGGATAGTGTCATATCCGCATCCGCATTCGAAATCATTTTCGGATATCGGATATCCGTATCCGCGGATACAGACGGATATCGGATAATTATCCTATCCGCTAACGACCGATAAGTCAAGAATTATAAAAAGAAAATTTTAATTTAACATAAATATTTTTCAATCCCATTGATTATAAAAGTGTTAAAATTTAACAAATATGATGATAACAAATAGTTTCGAGCAATCAATAAGCATTAAGTGCATATAATATAAACTACTAACTTAATAAAATAATAAACGAATATCTTTTACTACACTAAAATACACATAATTTGAACTATAATCTTGACAAAAATCGGACGGATAATTTTCGGATGCGAATGTCGTCGTATCCGCATCCGCATCCGTTTTTTGGGATATCGGATATTATCCGCTTTTCGGATGCGGATGCGGACGGATTTCGGATTTTTCGGATATCCATTGACAGCCCTATTTGTTTCCAAGTTCGCTCCCAACTTTATCTGATTTTGGGGCCATGTATGCTAATACTACATTTGGATTCAGGTATGACCATAGAGAGTACAATTCTAATAAATTGTACCAAGCGAACTTATGGTGACAGACTCTGATGTCTCTACGGGTGCGTTAGATTAGAGGAGAGATGTTAGAGCTTGTGAGATCCGTGAACAAAAATTTGATTAGTGTTTGGTTAGAGGTTGGATATGAATTAATGTAAAAGTAGATTAATTTTTATTTTGTAATAAATAATTAATATTTTTTTTATTAATGATTAATTTTAAATAATTAATAATTAATAATTAACCGTTAATATTTCAAAATTTAATATGGAAATTCAAATTCAAATTCTACTTCAACTACGAATTCAAACAAACTACGAGTTCAAACACTACGAATTCAAATGGAAATACAAATTTTAATATGAATTTAACATCGTCCTAACTATGTTTCGATCTACTCACGTGCAGTCTCATCAGAATCCAGCATTTTCATATCTTTGCAAAATTCTTATCGAGAGATAATTTTATAATCTCAGTAATGCTTTACTGGTCCAACTCCATGCACCGTTCGCGACATGCCAGAACTTCAGCTAATTTATGATTTGTTTGCCGTGGAGCCTCATTGCCTTTAGAAGAACGTGGCGACCTAAAGCGCGTCCTTCTTTCCATCATTTCCATCATTTTGTAGATATCTTCATAAAACGTCCGTTGCGAACGCCTACGGGTTGAACGAGCAGCAGAATGAGCGGGTAGGACGATGAATTGAAGAGGGACAATCCATATCAACATCATGATCAAACGTTGAGGTTTGGTTGAGCAAATTTATCTGGTTGGGAGTATTGAAAGGGCTGGAAGGAATGAGATCTCTAATTCAATTTTTAGCACATGGTTCTTACAACACAATGTCAAACGTAATCAATATATTATGTATTTATAATGGTCCTTTGCAGTGAATATGATTTCTAATGGAATAATTTGAGAACCTAAATATTGTTCTATTGTTACTTGGACCTTCAAATTATTCTAATTTTTGTATGTTGCTTTTTTAGTATTGATTTTATATTTTGTGCGGCAATATAGAATAACGATTCAAAATTTCAATGGAATATTAGTCTAAGACACATAAGTTACTGTTGGCCCTGGTATGTTCTTGCAGTTTCATCAAAAACTGAACTGTTGACATCTTTGCTGATTAATGATGCCTATCACATCCAAAATAGATAAGTCTTTTAAGTTATACACCCTTTATAGCTGAAAACCTTTTATTTTAAACTCGTCAGAGATTTATAAACTGCAAATGCTCTTTTGATTCAGATGAGCAGATCGCCAGTTTTCAAAGCAATGTTGGAGAGTGAAATGGAAGAGAGTAAAAGTGGCATTATCAAAATATTTGATGTCTCATACAACGTTCTTTGGTCATTTGTTCACTACTTGTACACAGCAGAAGTGCTTCTAGATGAACAGATGGCTTGCAACCTCCTAGTTTTGGCAGAGAAGTACCAAGTGAAACATCTCAAAGCTTTTTGTGAAAAATTCATGACATCAAAAGTAACCAATGATAACGCTATTTCAAGTTATGTATTTTCTCACAAGCACAATGCAAAACAACTGTTTGATGCTTCTTTATCATTGATCATGGACAATATGACAACATTAAGTGAGAGAGAGGAGTACAAAGAGCTGGTAGAAACTGATCCCAGATTGGTTGTAGAGATATATGAAGCTTATCTTAGTAGGCAGGTCAATACTGCTGTTGAAGACTTTCCGCATCTCAAGGTTAGCAATATTTCTATTTGAAGCATGTTTATAATGTAAGCCAGTTTGCAACTCAGTACTCCTCCTTATATGGTATTTGCTTGAAGACGACTCAGAGTATATTTGGCAAATAAAAGCGAAAATGTTTTCCTTTTAATAGAAAGTCCTTTTATTTCAAAAAGATAATAAGTTGAAAATTAGTTTTATAAAAATATTTTCTTTAAAAAATATTATTACAAAATCATTTAATTTTTCATACCTAATTGATTATTTGAATATTTCTCTTAGAAACAAAAAAGTTGCTTTTTGAAATTCTTAAGGATTTGTTTGGTTCTTATTTAGTTTTTTTTCTTCCCTTTTTAAATCTTTGAGATGGAGGAAGGACAGTGGATTTGATATTGGCATCAAGACCGTGGAAAGCGAAAAATAGTGTACATATGTTCCATGGTCGGAAATGCCAGAATTGGTCAGTGACTCAGTAATAGTAAGAAGATGGTAATGAAAAAAAAAAGTTGTTTGTAAACTTATTCGTCTGTGTGAAAATAATAGTAAAAACTTGGTGAAGTTCGCCCCCTGAAGATGGTAGGACCAATATTACTTCTAATGGAAATGGAAAGTGCACGTATGTAATGTAATTGTTTGTTGGTTGACTGATATTTCCGTAGAACATGTCATATACCTACTGGACAATGCGACATGTTTTATTTATCTAGTTTTACTACATTTAGTGGGTCAATATAGTTGATGATGTTGAATACGTTCATGTTTGTAGTTCAGATTGATTATTTGAACTAATACCATCTGAGCTCAATATTAACTTGTGTAATTGTAATGGATTCGATTACAAGAACGATTTTTCTTGGTTTATTGTTGGAACATACTTGGGGGTAGTATAATTGGTTAGAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010911166.1	1.9e-92	BTB/POZ domain-containing protein At4g08455
Swissprot	Q6DBN1.1	6.8e-79	BTB/POZ domain-containing protein At4g08455
trEMBL	A0A6I9QKV8	1.4e-92	BTB/POZ domain-containing protein At4g08455

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G08455.1	64.83	5e-88	320		BTB/POZ domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02740	AT4G08455.1	236	80	1	1	236	1	233	64.83	5e-88	320
AfisC4G02740	AT3G56230.1	206	127	5	27	229	86	273	28.16	8e-14	74.3
AfisC4G02740	AT1G01640.2	173	123	2	68	239	22	193	27.75	2e-12	69.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	83	167	70.5	1.1e-19

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0042787	P	protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0005737	C	cytoplasm
GO:0010033	P	response to organic substance
GO:0016607	C	nuclear speck
GO:0031463	C	Cul3-RING ubiquitin ligase complex
GO:0031625	F	ubiquitin protein ligase binding
GO:0032268	P	regulation of cellular protein metabolic process
GO:0042593	P	glucose homeostasis
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043433	P	negative regulation of sequence-specific DNA binding transcription factor activity
GO:1902237	P	positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:2000676	P	positive regulation of type B pancreatic cell apoptotic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10523	SPOP; speckle-type POZ protein	EC:-	Hedgehog signaling pathway	ko04340
K10523	SPOP; speckle-type POZ protein	EC:-	Hedgehog signaling pathway - fly	ko04341

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network