result

Gene information

Detail information of AfisC4G02860

Location

Gene	Chr	Start	End	Strand
AfisC4G02860	chr4	546539279	546544643	-

Sequences

CDS

>AfisC4G02860
ATGGCGGCAGGACAAAACGGGTCATATCGCGAATCCAGTTTAGAAGCTTCTAGAAGAATCAGGTATGAAGATATTAGATCTAGAGAATCTAGGGTTAGGGTTAGTTCAAGAGAGAGGAACGAAATTAATGGAAAAAATTATAACCGGGATCAAATTCATTCAAAATCGAGTGATCGTGAGCCTGGTGAGGTTTCTAGTGGGGAGGAGGACTATAAGGCTTCCAAACGAGAAGAAAAAAGGCTTAAATTTTCACCTATAGTTTGGGATAGGGACGATAAGAAGCAGCCTCCGACTGCAACTACTTTGAGAAATGGTAGCAACGGGCTTCCGCCGCCTCCACCACTTCCTAAGGATTTTGTACCTGGAACATCAGAAACTGGAAAATTTTCAGCTAATGTCAAAATGAATGATGAACATGAGGTGGAGGACGGAGAAGCTGGATTGTCTAGGCATATATCATCTTCTAGATGGGCCGATAGCGATGATAACGATGAATCTAACACAAGTATAACTAAAAAGAGGAAAATTACACCATTAGCAGATAAGAAGATTAGCCCTGAAACTGAAGAGGTGGTTGTAAGGGAAGAGTCTAGGCATATTTCATCTTCAAGATGGGCTGATAACGATGATAACTATGAATCTAATGCAAGTGTAATTAAAAAGAAGAAAACGACGCCTTTAGCTGATAAGAAAAGTAGTCCGGAAATCAGGGAGAAGGTCTTAAGAGAAGGGTCACAGGGTAATAATTCTAAGTCGACAGGTTCGGGTAGGGATGATAGGGATAGTGATCGAGAAAACGAGGTTGACAAAGATGGTTATATGGACATAGATGGGACTGATGATTACCAGAGTGATCATAATTCTGATTCAGAAGATGAAGATGGAAAAATGAGTTTGGTGCCTGCTACTCCACCTCAAAGGAGTATAAATATGCTGCAAGGTTGTAGAAGCGTTGATGATTTTGAGAGGCTGAATAAAATCGATGAAGGTACTTACGGGGTTGTTTACAGAGCTAAGGATAAGAAGACTGGGGAAGTAGTGGCATTAAAAAAGGTGAAAATGGAAAAGGAGAGAGAGGGGTTTCCATTAACTTCTCTGAGAGAGATTAATATTTTATTATCATTTCATCATCCTTCAATTGTAGACGTTAAGGAGGTGGTTGTTGGTAGTAGTTTGGATAGTATATTTATGGTAATGGAGTATATGGAGCATGATCTTAAAGCTCTTATGGAAACTATGAAACAACCGTTTAGTCAAAGTGAGGTCAAATGCTTAATGTTGCAGTTATTGTCTGGTGTAAAATACCTTCATGATAATTGGGTTCTTCACAGGGACTTGAAGACATCAAATCTTCTGCTAAATAATCAAGGTGACTTGAAAATTTGTGATTTTGGTTTATCTCGTCAATATGGTAGCCCACTAAAGCCATATACTCACCTTGTGGTAACTTTGTGGTACAGGTCGCCTGAACTTCTACTAGGAGCAAAAGAGTACTCAACTGCTATTGATATGTGGTCTTTAGGATGTGTGATGGCTGAACTTTTAGCTAAAGAACCATTATTTAGTGGCAAGTCCGAGTTTGACCAGCTCGATAAGATATTCAGAACTCTTGGTACCCCGAATGAGAAAATATGGCCTGGGTTTTCAAAGTTGCCTGGAGTTAAAGTTAACTTTGTCAAGCAACCGTATAATAGGTTGAGGGAGAAATTTCCACCAACTTCTTTTTCTGGACGCCCAACTTTGTCGGAAGCTGGATTTGATTTACTGAACAAACTTCTTACTTATGACCCTGAGAAGCGGATAACAGCTGAAGCTGCTCTCAATCATCCTTGGTTTCGTGAAGTTCCTTTGCCCAAATCGAAGGATTTTATGCCTACATTTCCTGCTCAACATGCACAAGACAGGCGTCTGCGAAGAATAATGAAGAGCCCAGATCCTCTAGAAGAGCAGCGAAGAAAAGAATTGCAGCTAGGTGATAAACTGGGATCTGGTGGGTTGTTTGGCTAA

Protein

Gene

>AfisC4G02860
CGAGCAGTATCTCTTTTTCGTTTCGGCGAACGTTCTCTCTCTCTCTCAAAGAAGCTCGCCAGACGATAATTTTAGGAGTCTTTTCATATTGATCAATTCACAAATCCCTAATTTAAGGTTAGCATCCTTCAACTCTATCTAAGATTTCCATAACCCCCAAATAATTGCTCAGACTCATCAGCGAAACAGTTTCTAGGGTTTAAACCCTCGAACCGTTAAGGTGTTTATGGCGGCAGGACAAAACGGGTCATATCGCGAATCCAGTTTAGAAGCTTCTAGAAGAATCAGGTATGAAGATATTAGATCTAGAGAATCTAGGGTTAGGGTTAGTTCAAGAGAGAGGAACGAAATTAATGGAAAAAATTATAACCGGGATCAAATTCATTCAAAATCGAGTGATCGTGAGCCTGGTGAGGTTTCTAGTGGGGAGGAGGACTATAAGGCTTCCAAACGAGAAGAAAAAAGGCTTAAATTTTCACCTATAGTTTGGGATAGGGACGATAAGAAGCAGCCTCCGACTGCAACTACTTTGAGAAATGGTAGCAACGGGCTTCCGCCGCCTCCACCACTTCCTAAGGATTTTGTACCTGGAACATCAGAAACTGGAAAATTTTCAGCTAATGTCAAAATGAATGATGAACATGAGGTGGAGGACGGAGAAGCTGGATTGTCTAGGCATATATCATCTTCTAGATGGGCCGATAGCGATGATAACGATGAATCTAACACAAGTATAACTAAAAAGAGGAAAATTACACCATTAGCAGATAAGAAGATTAGCCCTGAAACTGAAGAGGTGGTTGTAAGGGAAGAGTCTAGGCATATTTCATCTTCAAGATGGGCTGATAACGATGATAACTATGAATCTAATGCAAGTGTAATTAAAAAGAAGAAAACGACGCCTTTAGCTGATAAGAAAAGTAGTCCGGAAATCAGGGAGAAGGTCTTAAGAGAAGGGTCACAGGGTAATAATTCTAAGTCGACAGGTTCGGGTAGGGATGATAGGGATAGTGATCGAGAAAACGAGGTTGACAAAGATGGTTATATGGACATAGATGGGACTGATGATTACCAGAGTGATCATAATTCTGATTCAGAAGATGAAGATGGAAAAATGAGTTTGGTGCCTGCTACTCCACCTCAAAGGAGTATAAATATGCTGCAAGGTTGTAGAAGCGTTGATGATTTTGAGAGGCTGAATAAAATCGATGAAGGTACTTACGGGGTTGTTTACAGAGCTAAGGATAAGAAGACTGGGGAAGTAGTGGCATTAAAAAAGGTGAAAATGGAAAAGGAGAGAGAGGGGTTTCCATTAACTTCTCTGAGAGAGATTAATATTTTATTATCATTTCATCATCCTTCAATTGTAGACGTTAAGGAGGTGGTTGTTGGTAGTAGTTTGGATAGTATATTTATGGTAATGGAGTATATGGAGCATGATCTTAAAGCTCTTATGGAAACTATGAAACAACCGTTTAGTCAAAGTGAGGTCAAATGCTTAATGTTGCAGTTATTGTCTGGTGTAAAATACCTTCATGATAATTGGGTTCTTCACAGGTACTTGGGCATCTGAAGATTACTCTAAGTATCAGTTGTTTGTTCGTTCCGGCTTTTATCCCTGTTTACGCAATTACCTAGGCTGGGGCATTCATTTGATTAAGGAGTTTCTACAATGTGCATTAAAATATTTCAAAGATTTATCTCATGAGCCTTTCCCATTTGTCAATTCTGTGCTTCTTAACTAGCCTTCAATATACGAGCCTTCTCCCAGTATTAATTTTGTTTCTTTTAGTTAATTATCCTTTCTTTACACAATTACTTAGGTTGGGGTGTTACTATATTTGATTGAGTAGTGTATCTTATATGCATTAACATGCATTAACACAATTCCTAGTACTTCTTTCATGATCCCACTTTCCTTTTCACCACTTTTTGGAGAAGATCATTTTAGGATATAGGGTTAATTTTGATAATTTACACAAAAGTAAAAAAAGAAGTAAACTAGCTCATGTATGTTTCTCTTTTTTCCCCATTTGTAAAAAAGATTTCTGAATAGATGAGTAATGAATTGAGGTTGTAATAAAGTAAATAGTACATACCTTCAATATATTGCAGCTGTTTGAATTGAAAATTTTCTTTTGTCCAGGGACTTGAAGACATCAAATCTTCTGCTAAATAATCAAGGTGACTTGAAAATTTGTGATTTTGGTTTATCTCGTCAATATGGTAGCCCACTAAAGCCATATACTCACCTTGTGGTAACTTTGTGGTACAGGTACATCCTTTTTCCTTTCCTCCCCTACCTCGCTCACGCGCGCGCACACACGTATTTTTATTCAACTGTTAAAACTCACCATGGTTTTGTGTTGGCAGGTCGCCTGAACTTCTACTAGGAGCAAAAGAGTACTCAACTGCTATTGATATGTGGTCTTTAGGATGTGTGATGGCTGAACTTTTAGCTAAAGAACCATTATTTAGTGGCAAGTCCGAGTTTGACCAGCTCGATAAGGTAGACTTCACGATTTTACAAATATTTGTTAAATTCAGTTTCCAGATGTCATATTGGCTCACAGCAACCTCGCTTACATGCAGATATTCAGAACTCTTGGTACCCCGAATGAGAAAATATGGCCTGGGTTTTCAAAGTTGCCTGGAGTTAAAGTTAACTTTGTCAAGCAACCGTAAGTTTTCTGTATCTATGATGTGATGTTTTTAATGATATAGAATGCATTCTTATGAACCAACACTTTTTCCCAGGCGTACAGCTATGAGTGATCTTGCTCAGGCTTCCTGGCTTTACTTGGTGGCACTTTTCAATTAGGTGATGAATTGCTCAAATTTTTAGCAACTGAGACTTTTCGTATTGTATTCAGGTATAATAGGTTGAGGGAGAAATTTCCACCAACTTCTTTTTCTGGACGCCCAACTTTGTCGGAAGCTGGATTTGATTTACTGAACAAACTTCTTACTTATGACCCTGAGAAGGTAAGATCTACTTCTATTTCCTACATTTCATACATCGTTCTGCTCTTTCTTTTTCATTTTTTTCTTCATTTAGCAGAGTACCATTCTAATATTCGTTTTTATACATATTTCATGTAAATACTTACAGCGGATAACAGCTGAAGCTGCTCTCAATCATCCTTGGTTTCGTGAAGTTCCTTTGCCCAAATCGAAGGATTTTATGCCTACATTTCCTGCTCAACATGCACAAGACAGGTTTCATTTTTGTCTCTGAGCATTTATTTTTCGTTGTCATTTTAATTGTATGTGGTAACTTGCCTTATTCCAAAAGTACGCCAAATGAGTATATACCTAACCGCATCTAGTTTATTTAGTTGGTGGGGCGTATCTCATAATTTTCTTTATTTATCAGCAGTTTCTCATATAGAATAGCGGATGCCCTTTCTGTGTGCTTGACCATAGAGAGATGTCTAAGTATACTATGAATAATCTTGAGATTTCATGCAATTAACCATATACTTTATTCATGTCATGCAACACATCAACTATTCTCAACCTGCTTTTCTTTTGCATATTTAGGCGTCTGCGAAGAATAATGAAGAGCCCAGATCCTCTAGAAGAGCAGCGAAGAAAAGAATTGCAGCTAGGTGATAAACTGGGATCTGGTGGGTTGTTTGGCTAAAGCTAATGAACTGATTGCTTTGACATGAGCCATGAATTATAAGTGTAAGTGGCAATTCCTGCTGCGCTGTTTGATATTTATATGATGAATGAATGAGCTCTCAGTTGCAATGAAAATCCAATATCATTGATCACAATGTATTACCTCGTTTATTTGGTTCGTGTGGCATATATCATAATTTTTTTTTCTTAGATCAGTTTCATACTGAATTTTTCCATGTAATATCACTTAATTGATACATTGTATAACATCTTAGGGAATTTGGGTTTAATATTACAAATCCAAGATATGGTGTTTTATTTTTGTTGGCTGCGAAATTTCTTCTAACTTTGACAGTTTCACTTGTACATGCAAGAGGCTATCTGGGTGAAGGAGGGGCATTCTTTGCTTTTTCAGTAACAAATATTTTCTGGATAACTTTCTCATAATAAGGAAGGTAACGACTTAATTCTTATTGTGCATGTTCCGTACTTAATAGTTGCTGAGAAAAATTTAAGGTGCAATACTGCCAGTAAGAATAAGGTGGTAGTATTTAGTCAAAGCGACGAGGAAAATTGATCATGATTTTGCTTGTGTATAACTTCATATTCCCCCAAACAAATTCATTTTTATCCAAGGAGCCAAGGCAACGTCATGAATAGTATACTGCAATATCAGGCCACAATTTGATATTTTTTTCTTAGATAAATTGTGGTAATGTCAGTAGACCTAGAGAACGGGACAGAAATAAGCAGGGTGCCACATGTAGCTCACATACAGAAACGGTGGAGCTAGTGTGTGTTGCAAGGGCCAATTGATCCCAGTAAGATTTAGAAGCAAAAACAGCAAAAAAAAAGTAATATTATTTTTCTTAGAATGTATGCTTTCCATTTTTAGGCAGAAGACATGAAATGGGTAGAGTAGAATGGGAAATGAATAGTTGAAGCAATCAATAACACATGTTGCACGTCAGTCGTAAGGCTATTACAATTGTTATTGCATGTCAAATTTTTATTTACTATCATCATGTTCGTTATGTATAACTTAGCCCATCTCAAAACCAGCTCAAACGGTAGCTTAATGCCTGGAAGGTGACGCTATTTATTAGGTGATCATTTATATCTTTTGTTGGAAAATTGTATCAATAAGTATGTGTGAACATTATCTCACAAATCATATTATGATTTAAATCTCCTTTTTAATAAAATCTTTTCAGTAATGGTTTGATTTTAAACTTCCGATTCAAAACTCAGTTAAAAGGGCAATCGAGAAAGATCATCCAATCCATGTTAAAACAAAGAATATCAAGGTGTGTTCTTGAATCTACAATTAAAATTTTGTTGTTTTTGGAATGAAATAAAGATGGAACAAGAGAATTAAATTTTTAGGGGTAGATGAGAAGCTCAAATATCAATATTAATTTCTTGTGTATAAATTACTTTTATGGAGAGCATTGATGATTTTGCATACATAAATGTCAGTTTACAGTCACAATTCTAGCATACCTGTGTGTTTTCTTACAAACGTATAGAGGGAGGATTCAAAGCTCCCTCCTCCTTGTAGCAACATTCAATTTTTGTGTGTTAATTTTTTTTTAATGAAACAATATTTTAGTGGTTGGTATTGATTTAACATTCTGAACAGGTAATAATTGTATGTCCTTCAAAACCGCAAAAGTGTATAATGAGGTATTTCCAAAGAGAGGTGTAATTGATCTACTGCATGTCTGTGCGCACACAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261534.1	4.7e-231	cyclin-dependent kinase G-2 isoform X1
Swissprot	A2XUW1.1	5.1e-182	Cyclin-dependent kinase G-2
trEMBL	A0A5P1F2W5	2.4e-229	cyclin-dependent kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G67580.1	59.79	0.0	721		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02860	AT1G67580.2	674	199	14	49	668	97	752	59.79	0.0	721
AfisC4G02860	AT1G67580.1	674	199	14	49	668	97	752	59.79	0.0	721
AfisC4G02860	AT5G63370.4	641	297	14	1	628	1	609	46.65	2e-144	509

Ortholog group

Species	Genes
Allium cepa	g400580.t1
Allium fistulosum	AfisC4G02860
Allium sativum	Asa4G02248.1
Arabidopsis thaliana	AT1G67580.1; AT1G67580.2
Oryza sativa	LOC_Os02g39010.1; LOC_Os02g39010.2; LOC_Os02g39010.3; LOC_Os04g41100.1; LOC_Os04g41100.2; LOC_Os04g41100.3; LOC_Os04g41100.4; LOC_Os04g41100.5; LOC_Os04g41100.6

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	321	612	252.2	4.6e-75

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000398	P	mRNA splicing, via spliceosome
GO:0001558	P	regulation of cell growth
GO:0001824	P	blastocyst development
GO:0007155	P	cell adhesion
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005681	C	spliceosomal complex
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007088	P	regulation of mitotic nuclear division
GO:0007089	P	traversing start control point of mitotic cell cycle
GO:0008285	P	negative regulation of cell proliferation
GO:0008360	P	regulation of cell shape
GO:0010584	P	pollen exine formation
GO:0016592	C	mediator complex
GO:0016607	C	nuclear speck
GO:0031965	C	nuclear membrane
GO:0032953	P	regulation of (1->3)-beta-D-glucan biosynthetic process
GO:0034126	P	positive regulation of MyD88-dependent toll-like receptor signaling pathway
GO:0043410	P	positive regulation of MAPK cascade
GO:0044822	F	poly(A) RNA binding
GO:0048471	C	perinuclear region of cytoplasm
GO:0050684	P	regulation of mRNA processing
GO:2001234	P	negative regulation of apoptotic signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08818	CDC2L; cell division cycle 2-like	EC:2.7.11.22	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network