result

Gene information

Detail information of AfisC4G02946

Location

Gene	Chr	Start	End	Strand
AfisC4G02946	chr4	563298282	563303656	+

Sequences

CDS

Protein

Gene

>AfisC4G02946
ATTAAACCGTGGGTCTACTATGTAATCGGCACTACCTAAATAGATCTCATTTTACCAAAAGAAGAGGGCTTTCCTTTTTTTCCATCTTTCCCTTTTCTAATTGTCTTGTGGTTTCCAAGAATAGAAGCAACAAATAATAATATTACTGCAGCCAATCATCAAGACATCAACAAAGATAAACAATCAAAGATCTACTGGGTATGATTCTTCTTCTTTTATTAATTCTTTAATGCGATCGTTTCTAATATTTAATTCTAGGGCTCCCTTTTTTCCCTCTCCACTGTATTCTTTTTCCCCTAGGGTTTGTGCCAAAAGAATGGCCAGGGAGAAGATAAAAATAAGAAAAATAGACAATGTTACTGCAAGACAAGTAACCTTTTCTAAGAGAAGGAGAGGATTATTTAAGAAAGCTGAAGAATTATCAATTCTTTGTGATGCTGAAGTTGGACTTATTATCTTCTCTGCCACTGGCAAACTCTTTGAGTTTTCTAGTTCAAGGTACTGTTTTTTTTATCTCAATTAATCATTTATATTTAACATCTATGTCGATGCTAGCAAAATAATACAATATTATGTTTCGTTGATTGTAACAAACATGTTTTTGTGTCGATAATATTACCTTTTTTTCAAAAATAAATAAATAAATGAAAATAAATTAGTACTGTAATATTTGATTTAATTATTAACGTTTGAATAATATTGATTTGGGATCAATTAAGTGTAGATCTTATTGTTCAGAGAGATGGTAAGGGATCGGCCCTGATTTTCTTCATTATAGTGCATCAATGCTTAGTTTTCTAACTTAAATATCTTTTAATTTGATCAGAAGTTAATCAATTTGTTAGCTTAGGACTAGAGATTTTTATCCTTTTAATGCTACATCTTAGAATAATTGTACAAACTATGTGTATAGTGCCATAACAATAACATTATTAGGATGTTTCTTAATGCTGTATTATGAACTAGACAATCATCACCTACTCATACACAATGAAGAGAGCCAAATGGCCCTATGAAAGCACTAAGATTAAACAAAAATTGGAGTTGCATAGCTTAACTTCAGTTACTCGTATTATATTCTATTGCTTACAATCAAATTAATGGAACTGGGTTCGGACACATTTCTCCTCGAGTTAGTAACATTAGTTGTGGTAAAATATTCTATTACCTACCTCTTTAAGAACCTAATATGAGTAATCATTAGCTGTCCTTTTGTTCTATGTTCCCAATCTTATTTTAGCAAGGGTTCTTTCTTTCTTTCTATGTTTATTTGTTTGTTTGTTTGGTTTTATTTATTTTTATTTTTTTTATTTTTTGCATATTCTAAATCTTTAAGTTATGGTTCTTCGATTGTGCAGCGGTTTATTTTCCATCTTGTATCATGATTTATCCTTGTACCTTTCTAATCTATTACTTTTATTTGCAACAGTAGGGTGATTAATTCGCCAAAATCATCAGCTGATGACTTAATTTATAGTGATGCAATTTTCACGCACTTCAGTGAACTTTCTTTTCTTCTTCTTAGATTGTAGAAGCATATATGGGTGGCATATGATACTTTATTTTCTTCTAAAGTTTGTGATTATTAATTGTACAATATTAATAAAACAATATAATATGCAGATTAGTCACATATTTTGATTCTCTTTATCCGAAAAGTTCTCATGGCACTGATCTTCTTCTACGTACTTAATTTTTCTATGAGATATCTTGGCCTTATTACTGAACTGAAAGTGCTAAATTTTGAACAAGATCTAAGGGGTCGTTTGGTTTATTTTGTATTTTATGTTTTGAGTTTTCAACATTAATTACAAAATATGAGAAGAATGAAGGGAGGTCGGAAGGGATGAACGGAAGATTGGAGGGGACTATGAAGTGGATGGAGGAACGACGGAAGAATGAATTGTTGCTCGTGCTTCCGTTTTTCTCAAAACACGAAAAATGAAAAAAAGTTGTTTTCTATTTTGTGTGTTAAATTCGTTTTCTAAAATGATCATTTTTTATAATATACATGTGTCGTGCGTATTTTTGTATGGACGAAAACTCAAAACTAAAAACGGTAAACCAAACATAGCCTAAATTTCTAAGTTTTATATACCTCACAAAAGTTATGTGCATGTGATTTAGTATTATAGTTATATTTTTTATGTAAATATGCTTGTTCTTCATCAGAGTAAATACCCTTAAGTCTATTACATCCTTGCTGTTTATATGTAGTAAGCTATTCTATATGCACATTTATTCGATATTAGATTTTTGATCTACTAAAATGGTTCTTATTTTTACTACTAGAAGTTTGAAGGATATAATCGAGAAGCATGAAATGCATTCTAAGAAAATAGTGAGGTCGGAGCAACCAATGCTTGATTTGAATGTAAGTTGGTGCTTTCTTCAATATGAGTAAATTTTCTATAATCTATACATGTAAGTTTAGGAAATCGCTATCCAGGATAATAGAAATACATAATATATAGCCTACATGGTGAACTTTGTTATACGAAACATTCAACTTGTCAAATATTATCGTATACTCATTTGACTTTTTTATTTATTAAAACATTGATTTGAATATTTTACTTTTTGATTATCAATAGCTTGAGAGTAGCAACCTTACGAGATTGAACGAACAAATTGCTGAGATAAGCAAGCAGTTGAGGTACATGTAAATATTGAATCAAAATTGTATAACAATATAAATATGATTTTTTTTTTCATAAGATAAAGTTTGAATGTTTTCGTTGTTAAACATTCAGAAATATGAGGGGCGACGATCTTCAAGGTCTTACTATAGAAGAGCTTCAAAATCTGGAGAAGATACTTGAAACCGGATTAACTCGTGTTTTGAAAAAGAAGGCATTCTCTAATAATTCTATCATTTTTACAGTGAAGAAAAATTATATATATATATATATATATATATATATATATATATATATATATATATATATTGTTGTCGCTAAAACTTGCTAAAAATTTGAAAATTTACAGGGTGAACAAATCATGGAACAAATCGGTGGTCTTCAGATAAAGGTAGATGAATCTCTATCAAGTGAATTTCAAGTCAAGATATATTACTAAGCACAAACCTATAATAGTTTTGTCCCTACACATTTAAAACATTATGCAGCTTTTATAGGTGAGGAGGGATAAGTGCTTTTGGAGTGTGGATTCATGAATCTTTGGTTAGAAACCCATACTGGTTTTGGAAAAATAAAAATAAATGCTAACTTGTTCTTTGACTTTCTTAAATTGATAGTAAATTTACCTGATAAGCTTTTAGAATCCTAGCATTTGAGTGAACATGATTCATTTCTGAATATGTCTTCGCAATGTGTTGTTTGCAAAATGTAGGGATTCGAACTGATGGAAGAAAATATAAGATTGAAACGACAAGTATGTATCATACATTTTCCTTACCAATATATATGTCTCCATGTATGTTTATTTACACCCATACTATTATTTTTTCCATTTGTTTTCTGGGGCAATAGGTTTTGGAAATGACAATGGTAGGGAAGGGTGCATATGAAGAAGGGCAGTCTTCTGAATCAGTAACTAACATATCGCAAATAAGTGCACCACCGGACTTTGATGAAAGCTCTGATACATCTCTCAAATTGGGGTAGGATTCATACTTATAATTATACCAAGTATCACACACACATGTATATACATGCATAAATTTGTGTTACGTTATATCAACGAAAAATGAGATCAACCGAAAGTTTAGGGATGTTTAATCTACAAAAACACATACGTACATGTACATATACATGCACACACACGTATGTATGCATGTATGTTGCATCTGTGTACATATATGCATGTATGTATGTAAGTACATGAATGTATGAGAATCCTCTACATCCCATTTTACACCTCTACAGATTTTTGTGTTAAATTGTGGAAAAAATGCAATCAGTTGAAAATTTGGGACGCTCAATCTACATTATGAATATTTTGTTCATAAAAAATGGAATCATTTCGATACATTTAACATGTTAAAAATGCTAAATCAATATCAACCGTTAAAACATTTATTTAACTATCGATTTGCAATATTATTTTGCATATGTTACGATTATTCAAATTAACACAACTCTGTGGAGATGATCTCGAAACAAGTGAGAACATATCCGCAAATTTCATTCGATTTAAATTGTGTAGCTTGAAAAACCATAATCTTGTAGTTGTGGTGTGTACTAGGGAAGACAGTTGCGGAACCATACCTATACAGATACTTATATACATATACATATACATACATACACGCATATGAATCTACACATGCGCGCGCGCACGCGCACGCACACACAGAGAGAGTATACCCCTTAGCCTACGCCTCAAACGTATTTTACAGTTGAGAAATTCAAAATAAAACCAAACTTTGTGGATAGGTTTTTATACAATTCAGAATCATCTTCACATAATTTTGAATAATTTTGGCCATTATAACATTTTTAAAATATGTATTTCAAATCAGTGGCTTAATTAGCCTGTTAAAACTAATTAAACATTCTGAACACACTAAAAATTTCAAAACGATCATAAATTTAGGAAAGATGTTTTTTTAATAGTAAAAAACCTATCTTTAAATTTTGGTTTCTTTTCAACTTGTTAACCTCTATAGATCTTCGAGCTGTAACCACATAATACCAATAGAATCGGAAAAAAATTTGAGATCCAATCAAGAACCCAGGTTAGCAATCAATGTGTCATACTAGCTGTTTTCTATGTTAACTCATGCTCATATCTAATTTTCAATGTAATACGCTTGAAATATTTTAGTTTACTAAATAATCGTTCTACACATCATAAGCTTTGCTTCCATCTTGCCAACATTAATATAGAATCCAAGGAACATGTTAAATGGACTTGAGTCCTTTTATTGTTGTTTTTTGAAATTAAGTACTTAGATGGGAGTACACAGTTATACTACAAGTCTTTGATAGCATATAACATTCTATAAGTCAATATATGTCCATTAGTTAGAATCACGCACTATGCAGAATACAGAACGCCTAAGTATTGAGATAGTGGTGCTAGACGTCCTTTTGTTTCTCTCTGTGCAACTCGAATAAAATTTTTAACTGTTTATTTTACTGCAGTTTACCAGGTAATTGACTACTAAATATGTAAATAGAAAGCTGTGCGGAAGAAGATTTATCATACATACTGATATTTTTATCCAACTCACGAGTTTGTATAATAATGTCCATTTGTCAATATGTATTTTATGATGAGCGCAATGAATCTCATCTCATCAATGTTAGACATGTGTAATCAGCTAAAAATGCCCCTCCTTTTACGGTAGGAGACAAATTTCTTGTATGGATATATTAATTAACTGAACATTTAAAGAAAATTGCTATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	AEX92969.1	2.9e-77	MADS box protein 5, partial
Swissprot	Q5K4R0.3	7.2e-57	OsMADS47
trEMBL	H2BL61	2.1e-77	MADS box protein 5 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G22540.1	57.14	2e-66	248	AGL22;FAQ1;SVP	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02946	AT2G22540.1	238	79	4	30	245	1	237	57.14	2e-66	248
AfisC4G02946	AT2G22540.2	238	79	4	30	245	1	232	55.04	3e-63	238
AfisC4G02946	AT4G24540.1	218	95	3	30	245	1	217	55.05	2e-60	228

Ortholog group

Species	Genes
Allium cepa	g411532.t1
Allium fistulosum	AfisC4G02946
Allium sativum	Asa0G05496.1
Arabidopsis thaliana	AT2G22540.1; AT2G22540.2; AT4G24540.1
Oryza sativa	LOC_Os02g52340.1; LOC_Os03g08754.1; LOC_Os03g08754.2; LOC_Os06g11330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	39	86	85.7	9.5e-25
PF01486.14	K-box	Family	120	200	56.2	2.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0000060	P	protein import into nucleus, translocation
GO:0000900	F	translation repressor activity, nucleic acid binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0008134	F	transcription factor binding
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010076	P	maintenance of floral meristem identity
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010220	P	positive regulation of vernalization response
GO:0010440	P	stomatal lineage progression
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030154	P	cell differentiation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0048438	P	floral whorl development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048574	P	long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network