result

Gene information

Detail information of AfisC4G03072

Location

Gene	Chr	Start	End	Strand
AfisC4G03072	chr4	586914897	586916674	-

Sequences

CDS

Protein

Gene

>AfisC4G03072
ATGGGAAGATCTCCAAGTAGCGATGAGACTAATGGTGTGAAGAAAGGTCCTTGGTCTCCCGAAGAAGATCAAATTCTTGTTGATTACATCCAAAAGCATGGTCATGGCAGCTGGAGAGCTTTCCCTAAGTTAGCTGGTGCTCATATATATCTACTTTTTATGTGTTCTTTAATTACTTTTCTACAGCATCAGATCATCATGAACTAAAGTTTCCATCATTTTTTTTGTCAAATCATCTTTTTTGTTTTCATGCATGCATGGTCTTAAAACAATCAGATAAGAAGAACCTTTGTATTCTGCAGTGTCTTACCAATATTTCTAGCTAAATATTCCGTATTTATGACAAGTTTATTGGTATTGCCCATACAATTACTTATTCGATATTGTATTATTTGTTCTTCCAGGTCTTAATAGATGTGGGAAGAGTTGCAGATTGAGATGGACTAATTATTTGAGACCTGATATTAAAAGAGGAAAGTTTTCTCCTGAAGAAGAGCAAAAAATCCTCAATCTCCATTCAATTCTTGGCAACAAGTAATTGTTCATCCTATTAAATCTTTTCCGTTTGCACTTAAATTTAGGACATTGTCAACTATACTGTTTGAAATGACAAGTTGTTATTGCCTCCACCTTGTATATACTCCATATGAGCACTTTTCCTTTTTTCTACCGGTCCTTATTTCATGTTTTAGGAACAACTCTTATTACCACCAAATGAAACGTAACATGCTTAATGAAGAAAATTGTTAGCACTTGCTCGTATACAATGTTAACGATCAATTTTGACACTTTATTTTTATAATTTAATTTTCTGTAATAGTGAACAAAATGCAACTTTTATATGTATATATGATTAATTATCAAATATCAAATAATCATAGAACAGATAATCTACAGTTAGTTTTGTATATGTGCACATCATGCCTGCCACATGATATCGTATATCATTGAAGTTGGAGGCAGGAAAATCATGTTATATCATGTTACAAGAAGATCACCAAACACACAATCATATCAACTTATCTACCTTTTTACCATTTTCTTTTGAGTATAACAATAATAAACTTATATGACATTGATAAAATTAACTTGATCTCAGATGGTCAGCAATTGCAACACATCTACCAGGAAGAACAGATAACGAGATAAAGAACTTCTGGAACACGCATCTAAAAAAGAAACTTATCCAAATGGGTTTCGACCCAATGACACATAGGCCTAGAACTGATGTATTTGCTGCTCTTCCTGGCCTTTTAGCCCTAGCCAACCTGTGCGACCTTGTTGAGCGTCGACCCTGGGATGATCATTCCTTAAATCTTCATTCCTCAGAGTCAGCCTTACAATCTGCCAAAATCCAATATTTGCAGCATATTTTGCTTCAGTCTACCACAAATGTAGCTCATCAAAGTCCCACATTGAACCCTACTTCTATCGATCCTACCCTTCAGCAAGGCAGTTTGAACTTCATCAATACTATGCCCAATCTTGATCTTGATTTTGGTTCCACAGAGTTAATGAACAACAATCCTGTTCTAGACGATTTTGAGCAACAAGTAATAGTGCCTAATCGGTATGATACGAATCAAGATTCTTCTAGTTTAAATGCATTTTTTTGCCAGGGAGAGAATAGTAATTCGAGCAATTCGTTGCTACTGGAAGGACTTCCGCCTCTGACGGAAGCTTCTATGGGTCCTACTGAAGATGTCTGCAGCAACATGTCTTCTTTCTGGGCGCCTGAGCTATTGCTTGATGATCCATTTATGACCGACTTTGTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255719.1	6.5e-106	transcription factor MYB39-like
Swissprot	Q9S9Z2.1	1.2e-77	Myb-related protein 93
trEMBL	A0A5P1FBY2	4.7e-106	Transcription factor MYB39

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34670.1	66.98	3e-78	288	AtMYB93;MYB93	myb domain protein 93

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03072	AT1G34670.1	215	65	3	1	215	1	209	66.98	3e-78	288
AfisC4G03072	AT5G10280.1	206	59	5	1	201	1	196	64.08	4e-72	268
AfisC4G03072	AT5G16770.2	215	68	4	1	212	1	202	60.93	5e-68	254

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	15	62	60.7	9.8e-17
PF00249.28	Myb_DNA-binding	Domain	68	113	62.1	3.6e-17

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0080091	P	regulation of raffinose metabolic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network