result

Gene information

Detail information of AfisC4G03169

Location

Gene	Chr	Start	End	Strand
AfisC4G03169	chr4	609872508	609873807	-

Sequences

CDS

Protein

Gene

>AfisC4G03169
atggagagtggacttaatgttcttggattggtttgcttggtggatgaaggggtgatgaaggagacagcaaatttcaaagctgttagggttttggagaagttgtgtgggggcgataatttaaaatttgttaagctagtaaggggtttgttgcaaaattttaagggaggcaaacaaggtgaaaaggttagcttttgtgaaacttaaaaataatcatttggttgttgtcgatataaaaaaattcaaacttaagtgtgtgtatatttacatacatgcatgcatgcatgtatgtatgtacgtataacttattcaaaatgcaatgttgtttgtgtggattggcgttcatgtgttgtagttagttagcttgtaaatatgtttgttgattaggtcccaagaatacaataagtctttctcatgaaaaaactaaaaataaaaattatggttgcttggttgtttcaccgttgatggttttcgttgatcttcatacatttaattgtaactattatttcattagtgtatctcaaagctgctgagtttgatattcaatgtagtagtttataaggtttcctaaggtcacatattaaagttgcataccatgtctggtttgattgctttctcctatgttagtggtgaaatgtttagatattgttcaattagtcacctgcagtgcattctatacatgaagttaacgcccactagaggtcaaagaagatatcttgaaatatgtattctgatcaaaaagaacaatgttgtttgtatagaaggtttcttctcttataatattatagtaaggtcaaactcatgaattacctcagtaattcaacacaaccaaagtgttcaattaaaaagaaaaaaggaaataaaagcaaacttccgataatattgtcatgaatcaaaataatgaatctcctgaccagcaaacaaaaaggcaaaggaaggtaagttttcatttttctaattgaatacttgtgtgattgtggtccttatattccattccatgcttcttctttattcttcttcttcttcatattccaaagtatctccttataatccccttagaaaccacactcaaaataatgaatacgttaatgaagttgcagacgatgaagaaatgcatgaagaagagaagaaggttgggaagaaaatctctaaagagaggaggagcatatttatttgttgtcaggccaagaacaatgcagagctgtccgaagcgaagaagtatcataaaaggcataaggtgtgcgaattgcactcgaaggctccggctattgtggttgctggtttgattcatagaatgtgctag

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026392166.1	2.7e-07	squamosa promoter-binding protein 1-like
Swissprot	Q9S7P5.1	7.0e-08	Squamosa promoter-binding-like protein 12
trEMBL	A0A4Y7ICA8	2.0e-07	SBP-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G02065.2	50.00	3e-10	60.1	SPL8	squamosa promoter binding protein-like 8

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03169	AT1G02065.2	60	23	2	67	125	176	229	50.00	3e-10	60.1
AfisC4G03169	AT3G60030.1	44	18	1	83	125	125	168	56.82	4e-10	60.1
AfisC4G03169	AT1G02065.1	42	14	1	85	125	188	229	64.29	5e-10	59.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	87	125	35.4	8.6e-09

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009941	C	chloroplast envelope
GO:0010321	P	regulation of vegetative phase change
GO:0044212	F	transcription regulatory region DNA binding
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	P	anther development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network