result

Gene information

Detail information of AfisC4G03233

Location

Gene	Chr	Start	End	Strand
AfisC4G03233	chr4	618117288	618118310	+

Sequences

CDS

Protein

Gene

>AfisC4G03233
CCTCCCAGCTTCAATCAATTGATTTTGCCTACATATTAAAAAAAACACACAATGCTTGATAAAAATCAAGAATTAAGCCTCACACTAAGCCTCAACTTTACAGCTAATCTCCATAGTAACTCACCACAAGGACTTCAAACAACTCGTGTATGCTCAAAGAAAGAAGGTTGTAAATCGTATTTGAATGAAAGAGAAAGAAATAGAGTTTGCTCTCCACACAGTACGATTACAAGCTTGCAAAGTGGAAAAAGAAGCACAGGAGAAAGCAACACTAGTAATAATAGTGATGAAGAAGATGGTGATGGTAGTAGGAAGAAGTTGAGGTTGTCCAAAGAGCAAGCCGCTGTTTTAGAAGAAAGCTTCAAAGAACACAATACTCTTAACCCTGTGAATATTTCGTACCCTTAAATTTATTTGATTCTTTTATATATATTTACTCAAGAATTGACTCATGCTAATGTTAGGAATGCAGAAAGAGAAGCATGCACTGGCAAGGAGATTGAACCTCCAACCACGGCAAGTGGAAGTTTGGTTCCAAAACCGAAGAGCAAGGTAGCAATTCTTCTACTTCTAGTGAGAAAATAATTGCATGGTGCTTAAATTTTAGAAAATAATACTCGAGATGTGATATTTTAGGACGAAGCTAAAACAGACAGAAGTAGACCTGGAACTGTTGAAAAGATGCTTCAATAACCTGAGTGAAGAAAACCGTCGAATGCAGAAAGAAGTAGAAGAGCTACGGGCTTTAAAACTGTCATCGCAATTCTACATGAACATGACGCCACCAACTACGCTAACAATGTGTCCTTCATGCAAAAGGGTGACTTCATCTCGAGATACCAGGTCTTAAAATGATGAAATTGTGTTTATATTTTCTTAGAAATCGGTTTTATTTTTGGCGCTTCTGTATGCGTATGTATGTACTTTATACAAAGGGTTCAAGTTCAACACATTTTTTGTAATGATACATTCATACTCTCCTTTTCTCTGTATTTATCATTTCTTTATCGATAATGCATTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	RWR89766.1	9.4e-53	homeobox-leucine zipper protein HAT4-like protein
Swissprot	Q05466.1	9.5e-50	Homeodomain-leucine zipper protein HAT4
trEMBL	A0A443PG61	6.8e-53	Homeobox-leucine zipper protein HAT4-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G16780.1	71.33	2e-54	208	ATHB-2;ATHB2;HAT4;HB-2	homeobox protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03233	AT4G16780.1	143	36	1	65	202	101	243	71.33	2e-54	208
AfisC4G03233	AT3G60390.1	182	44	2	46	200	93	274	60.99	2e-53	205
AfisC4G03233	AT5G47370.1	243	77	4	1	201	1	243	51.03	3e-53	204

Ortholog group

Species	Genes
Allium cepa	g294566.t1
Allium fistulosum	AfisC4G03233
Allium sativum	Asa4G03162.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	87	141	59.8	1.5e-16
PF02183.15	HALZ	Family	143	177	30.4	3e-07

Gene Ontology

Accession	Ontology	Name
GO:0000123	C	histone acetyltransferase complex
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009585	P	red, far-red light phototransduction
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010015	P	root morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010218	P	response to far red light
GO:0010321	P	regulation of vegetative phase change
GO:0010484	F	H3 histone acetyltransferase activity
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016573	P	histone acetylation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0048467	P	gynoecium development
GO:0080127	P	fruit septum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network