result

Gene information

Detail information of AfisC4G03316

Location

Gene	Chr	Start	End	Strand
AfisC4G03316	chr4	634544242	634545990	-

Sequences

CDS

Protein

Gene

>AfisC4G03316
ATGGCGGATATGTTCACAAAGGTAATATTTTTATATTTCTGTTGAACATAATGTAGTTTTATACTACATTGCTGTATTTATAATTATCTGTTATGCTCATGTTTGCAACTTACATGCACTAGAATTTATATTATGTTTTGCTATTTCATTTTCAGTCCTTATGGACTTAAATGTGAGAGATATTATATTTGTATTTTGTATTTTTATATGTAGGTAGTTGATCAGTTGAAGGCGAATTCAGGCATATCTTTCAAGCTCCTTTGGATTCGGTAAGGATCTATGCTATTGAGTTAGTTATTTGACTTTTGAGTGTGCATGTGCGCGCTCACTCGTGTGCATTCCCGTGTGTCTAGAAAAGCAGAAATATTTTGCCATCTGAGTTCCAATTGTTATGGGATATTTTCTCGAAATCCTAAAATGGGGAAAAAATAAATAAAAAACTAATGATATTGATTAGAGTGTGTGTTCACTCATATTTCATCTATTTTATTATTGCATTCATCATCTTGTAATCATATAATGATTTTTTTTAAATAGCTTATTCATCCAGTAAATGACCACACTATTTATCTGAATGAGAGTCACAAGAAGCAGCTCAAGCAGGAATATGGTAAGTTGTCTACTTGTTGTAATCATCAACATTTTTTAAAATAGGAAGTCTTGATTTATTCCCCTTTTTAGTATTGCAGGTCTTAACATTTCTTTTGCTCCTCTCTTAATAATTATCAGGAATAGAGCCCTGGACGTTTGAGCAACATCATGGCGAAGCAGTTTTTATTCCAGCAGGATGCCCTCATCAAGTAACAAATAGAAAGGTTAGTGTTCTCTATACTCTATTATTGATTGATATAGAGGATTTTAGCAACGGTGTAATGAATTCATATTTTTGTTATTTTTTTTATCATAATTATACATCAGATTATTTTGCTTTTTATTTAAGATGGTACATTTATTGATTTTCTTAGATATTATAGGATGTTTATACTGTACTTTATATAAATAATTTGATCTATTTGTCTCAACTGATGATTTTCACCCTTGATAAATTTGAGAGACTTACTGGAGAAAAACTAGATAGTCTCAAACCAAAGAAAAATAACTAGAAACTAATTTCATTTAATCCTAGAAAAATGTCACTAAAAATATAAGTATAGTCATTATATATGTATTCAATTATACAATATTTTTCTCATTTTTCCTTTTGCGTGGTAGCGTGTGTGTGTGTGTATAAAATCTCTGTGTGTGTGTGTATTCACTTATGAGTCTAAACTTTTGTTATTGTAATTTTTCAGTCTTGCATTAGAGTAGCCATGGACTTTGTTTCTCCTGAGAGTCTCATTCAATGTGTCAGTTTAACTGAAGAGTTTCGACTGCTTCCAAAAACTCATAGGTCAAAGGAAGACAAATTAGAGGTACATATTGTTTTCAATTAATGTATTTAGAAAAAAAAGAAAAGAAAATCATTTCTCGCTTAAGTTAGCAACTTCATCTGCATTTCTCTCTGTGATCATGTATACTTATGAACTAAAGATCTTATTATTTTTCTTGGTTTATAACTCTATGCCCGGATTAGTTAGCTTCACATGATGTAGAAACTGACCTGACAGCTGTTCCATATTTTGTATGCAGGTAAAGAAAATGTCTGTATATTCCATGCAAGAAGCTGTGAAAGAAGCTAACAAATTGATATCCTCTATCAGGTCAGACTGGTGTATTTACAAGTTACTGAACAATGCTTCTGTCAAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK69164.1	2.2e-45	uncharacterized protein A4U43_C05F20010
Swissprot	Q9SSE9.1	1.0e-31	Protein JUMONJI 25
trEMBL	A0A5P1ETN3	1.6e-45	JmjC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00990.1	63.33	1e-42	168		Transcription factor jumonji (jmjC) domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03316	AT4G00990.1	120	43	1	8	126	720	839	63.33	1e-42	168
AfisC4G03316	AT1G11950.1	115	47	0	6	120	757	871	59.13	1e-39	158
AfisC4G03316	AT1G62310.1	101	37	0	6	106	783	883	63.37	2e-35	144

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02373.19	JmjC	Domain	14	69	52.3	6.4e-14

Gene Ontology

Accession	Ontology	Name
GO:0000785	C	chromatin
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005654	C	nucleoplasm
GO:0016491	F	oxidoreductase activity
GO:0009555	P	pollen development
GO:0009908	P	flower development
GO:0031490	F	chromatin DNA binding
GO:0032454	F	histone demethylase activity (H3-K9 specific)
GO:0032776	P	DNA methylation on cytosine
GO:0033169	P	histone H3-K9 demethylation
GO:0048366	P	leaf development
GO:0060969	P	negative regulation of gene silencing
GO:0070919	P	production of siRNA involved in chromatin silencing by small RNA
GO:0080188	P	RNA-directed DNA methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network