Detail information of AfisC4G03414


Location
GeneChrStartEndStrand
AfisC4G03414chr4654403504654414262-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020263645.19.9e-77MADS-box transcription factor 16-like isoform X1
SwissprotQ003J2.14.0e-59VviAP3b
trEMBLG8FNH66.6e-75APETALA3-like protein 4 (Fragment)

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G54340.145.256e-46 180AP3;ATAP3K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
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Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105778.51.6e-22
PF01486.14K-boxFamily8416769.12.5e-19

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0006355Pregulation of transcription, DNA-templated
GO:0008360Pregulation of cell shape
GO:0010093Pspecification of floral organ identity
GO:0048316Pseed development
GO:0048481Pplant ovule development
GO:0080155Pregulation of double fertilization forming a zygote and endosperm
GO:2000029Pregulation of proanthocyanidin biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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