result

Gene information

Detail information of AfisC4G03417

Location

Gene	Chr	Start	End	Strand
AfisC4G03417	chr4	655414335	655416159	-

Sequences

CDS

Protein

Gene

>AfisC4G03417
CAGAGATGTTTGCAGCAACCATGGCGGCGTTGCAGAAGCTCTAATTCCGTGTCTTAAATATCCTCTTCACAGTTCTCAACTTTCATCGAAAACAAGAAAAAGCCGTTCCTTCTCTCTTCTTTTACAAGAAAAGAAGGAGAAGAAACTAAACAATTGAAGAAGAGAGAGAAGCCCATACATACATCCATGATAAGCTGCAGAGAGAGAAAGCAAAATAATCAATAAAAAAAGTAGCAAGAAAGCAACAATTGCAGGCAGAGCAGCTTCTGCTCCTTCTGTTCCACAGCTTCTGAACCAAAATAAAGAGTAAAGTTTCACTACCCTAATCCAATTTTCTCTCTCTTTGCTTCTCCAAATTCAGCAAAAAACTCTTTTACCATCAACTAAAAGATATGTAACTGCACTAATTAACATATTTTGTCAACCTAGCCTGTACTATTCATTAACTGCAACCACATATTAACTCAATAACTTACCCTAATTCATCATAGATCTATTCACTGGTAATGGATAGTTGTCCATGGCGGGCTTCACTCTAGGCGGCAGTAGCGGCGATCAAGAAGAAGACCCGAACTTATTCATATACTCTTCTAATAATTCTGGAAACCCTAGAGGTAATTTTGAGCTATGGCAGCAGCATCAGCAAATATCAAGGCAGCCTCGTCAGTTTTACTCTTCTACCCCTACCATGCTTGCCTTTTCCGCTATAAACCAGCATAATTTAGCTGGGTCTGGGAGTGGCACGGTTGTAAATAGAAGGGGAAGTTCGTCTGGAAGTGGTGGGATGAGCTGCCAAGACTGTGGTAATCAAGCTAAAAAAGACTGTGCATATATGCGGTGTAGGACATGCTGTAAGAGTAGAGGATTTCAGTGCCCTACGCACATTAAGAGCACTTGGGTTCCAGTTGCTACACGGCGTGAACGCCAGCAGCAACTTGCTGCTGGCATTTCAATTGGTCGACAACAACAGCAGCAACAGCAATCACATATGCAACAACATCGAGAATTGCCCAAAAGACCACGTGAAATTACTACCATACTTCCCTTAACAACTTCTTCTTCCGGTAATTCTCCTAGATTAAAAGTGAATTTTTTTTTTATTTTTTGTGTTTGATGAAGCTTCTTTTTATGTACATTAGAAATTGAAGGTATTAAGTTTTAATAAAATTAAGAAATTGCCACAAACAAATTGAGTCTTGAATCATCAAATTCCATGTTTGGTAAAATCTTAATTGACTTAGAATTTATGACTAGCAGGAATGGAAGTGAGATACCCATCAGAGATAAACTCAACATCAGTGTTCAGATGTGTGCGAGTAAGCCAAATGGACGAAGGAGAAGAAGAATATGCATACCAAACTGCAGTAAATATAGGAGGGCATTTGTTCCGAGGAATACTGTATGATCAAGGTCCAGAACAGTTTCATGTAGAATCATCATCTGCTGCTGCAATTACCGATTCTAGTAGGAACGTAGCGGGTTCGGGTGCAATGGCGGATCAGGATAATTCGGCGTATCCGACTGCGTTAAATGCATTTATAGAGGGTACACAGTTTTTTCCTCATCATCACCATCATCATCATCGAAGACCTTAATTTTTAGTATTAAGTTTTATTAGGGTATATATAGAGTCTTTCATCATCATCATTCTATAATAGGAATTCTATCTTGGTAGTATAATTGTCTTAAATTTGTTATTTGAGGGAATTTCTTGTTTTTCTCCAATCTTTCTCTTTTTAGCATTCTAGCGAGTTAGTTCTGAGGTTTATACATTGCTTAATGATTGAGCTATATTGAGTTCATTTGCACTATTATTGTTAATTCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020695503.1	2.8e-50	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0.1	1.1e-40	Protein SHORT INTERNODES
trEMBL	A0A8T3AT82	3.3e-53	Protein SHI RELATED SEQUENCE 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G51060.1	41.53	8e-52	200	AtSTY1;SRS1;STY1	Lateral root primordium (LRP) protein-related

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03417	AT3G51060.1	313	111	10	32	284	67	367	41.53	8e-52	200
AfisC4G03417	AT5G66350.1	279	126	8	31	282	54	326	43.01	1e-50	196
AfisC4G03417	AT1G75520.1	331	121	11	13	282	31	341	38.97	3e-49	192

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF05142.9	DUF702	Family	88	235	215.0	5.7e-64

Gene Ontology

Accession	Ontology	Name
GO:0005634	C	nucleus
GO:0009299	P	mRNA transcription
GO:0009733	P	response to auxin
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010051	P	xylem and phloem pattern formation
GO:0010252	P	auxin homeostasis
GO:0046982	F	protein heterodimerization activity
GO:0048479	P	style development
GO:0048480	P	stigma development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network