result

Gene information

Detail information of AfisC4G03442

Location

Gene	Chr	Start	End	Strand
AfisC4G03442	chr4	660339116	660340761	+

Sequences

CDS

Protein

Gene

>AfisC4G03442
CCGGTTTATCCCACCTTAGAAATATGCTAGGTAAATAACTTACACGGTTCCACCACCTTCTAAGATATGAAAAGCAACAAGAACACATCATAATTCCACTAACTATAGTGACATGCGCACAGAACATATATTCCTTTGCAAACACTTTAGACTATCAGCTGAATAAATAAAACAAGTCTTTTTCCTTTTTCTTTCTTCTCTTTAGATCTCTTGCATAAACAAGTGAAGAGTACACCATCAAAAGCTTCGTTTATTGCTTACATATGGATACTCAGTGGCATCAGGTTTATAACTCTTCATTGTTTTTTGAATATATTCATCTTTCTGATAATTTTTTTGTGATTAGATCGAATTTTGATGCAGGCAGTTCCTTACTTTATGCTTGCTTTAATCCCTGTCAACACCTTTAGTATAAACCTTTATTGTTTCATGCTTTTATGTAATAAAGCAGTTGTGCCTGAAAAGCTTTTGCTTTGTTCTTTTGAACCACACAAGTGTATACATGTGGTTTCTCTTTCAACTTTTTTAATGTACAGTGATCAACACTTTTTAGGTAAGTATATATGTGTATTCTTCTTTTATCTTATAACTTGATCATCAATTCATCAATTTCCCTCAAAATGATCAAAATTTCAGGAGTTAGGGTTAGTAAAACCCATGGAGAACAACGACAACAACAACAACGGTAGTAGTAGTAACTTCAACACAAGCAATTTGATTAGCAGTACAAGAAGAGAAAGGCCACAAAAAGAGCAAGCTAATTTAAACTGCCCTAGATGCAAATCCACACACACAAAATTTTGTTACTACAACAATTATAGCCTCACCCAACCAAGGTATCACTGCAAAACATGTAGAAGATATTGGACTGAAGGTGGTTCTCTCAGAAACGTCCCTATTGGTGGTGGTTCCAGAAAAAACAAGAAGATCAGTTCATCATCATCATCATCATCAAATTTGAATACTCTGATGTCATATGTAACACCTATGTCCACTACAATAACTTCAACTTCTACCATTACTAAGCAAAACCCTAATCAAGATTTGAACTTTGCTTTCACTTCTGCTAATACTAATACTAATAGCACAACAAATCCACCAAATGTTTTAAATTTGTTGGAGAGTGGTAGCAGGACGATGATCAACCCATTTATGCCAATAGTGCAAAACTATGAATCAGGGTTTGGGTTGCATGAATTTAGGAGTACAAGATTTGCATTGGACGGTGTTAGTGGAAGTGTTAATGAAGGTAACATTGGTGGTAGTAGAATGTTGTTTCCTTTTGAAGAAACAAGGCAAGGGAGTTCGGGTATTAATAATGTTAGCAATGGTAGTGATCGTGGAGACAATCGATTCGAGCAAAAAGGGTTTTGGACTAGCATGATGGGAGGAGGAGGATCATGGTAGATGTTTGATCATGTATGATAAAGTTGTGATTTTATTGATGGTTATTATGGTTTACTAGCTAACAGTATAAGGTATGATTATTATCTAGGATAAAAAACTCACTTCTTTACTTACTCTATATTCACTACTATTGAAGCTTCTTTTTAGCTTGATTCAAGAAAATGATATACTTTGGAATTGGTTATATTTCTTTTTCTTTCTCTCTATCTTTTGACAGAACAGTGATATGGTATTGTCAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021638405.1	9.8e-31	dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q8LAP8.2	1.5e-23	Dof zinc finger protein DOF4.6
trEMBL	A0A2C9W9M7	3.5e-30	Dof-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24060.1	45.09	9e-32	134		Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03442	AT4G24060.1	173	64	7	1	149	1	166	45.09	9e-32	134
AfisC4G03442	AT3G61850.1	262	99	11	38	263	65	296	37.02	1e-30	130
AfisC4G03442	AT3G61850.3	262	99	11	38	263	53	284	37.02	1e-30	130

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	48	104	110.0	4.2e-32

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0010052	P	guard cell differentiation
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048364	P	root development
GO:1902066	P	regulation of cell wall pectin metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network