result

Gene information

Detail information of AfisC4G03594

Location

Gene	Chr	Start	End	Strand
AfisC4G03594	chr4	679519609	679522189	-

Sequences

CDS

Protein

Gene

>AfisC4G03594
ATGGAAATGGATAGTGAACTTTCAAAGACAGTAAGTGAACACCCGCTTCAATTTTTTATACAGTTCGTTATTCCTTGGAAATGATGTATGCTATCTTGTGATCGGTGAATCTTTGAACAATTTAATTTATAAATCAGTTTGGAGAATGTTTAAGACTAATGTGAAGGAGAACTTCTTAACAGTGATCTACTAATAAACTTCCTCATCTTTTAAAAACTAGGAAATCTACTATGGTAGCAGCATACTATTGTCTTATGAAATTATTACTTTAGCCTGCCAAACTATATTGTTACTGGGTCCAAATATATTTGGAATTAAATATATGGTGCATCTGAATTTTTGTGGCAGATACAGTAAGCTTAGGACCCTAATTGCTTATAATTACTTGAGTGTAGTAGATTGGCAATAACATAGTTATAGGGTGAAAATTTTCCGTTCCTATGTATTTTTTGGACAAAATTATATAAGGGTAAGCAATCATATTTTCTTGAAAAATTTGATACTTTGCATGTTTAAAGATAAATACGTAAGATATGTAATTGTAAATCATATTGATTTTCTTTTATCATTATCATATTTAGAATGATTACTTACTTCACAACAGGTTGGAGGTTAAGCAAAATAATGTTTATTTTTATCACCATCAATTCCTATATGACGCTCATCTGCTAAACTTGGTGCATAAACATATGATGATTTGTTCTTTGTTGCATTAAAGAAAAGTATCTAAGCAATTTACAACTGTTCTACATAACTTACACATTTAGGTGGCTACCTTTATTGTTCAAAAAATTTTGTTGGATGATGTCGGCCTTCACTATATCTGTGCTACAGCAGAGCGCTTTTTTGCAGTTGGTAGTGTACTTGGAAACATGGTTGTAACTCTTGCTGAACAACCGTCCACAAGGCTGCTCAAGCATATCATCCGCTGTTATCTTAGGCTTTTAGACAACCCAAGGTTTATTCGAAATTTTAGTTCTCACACACGCATGCATCTAAGCATATGCATATTATGGTATAGACATAAGAATTTGAACTCCTCTCTGTGAACATACCCAGCTCATATATTCATATGTTTGACTCCAAAAGATAGCTTAACAAATTGAGTTTGATTTATGAACACGAACAGCATTGCATAAAATATCATGGATTTTTCAACCATATGCATTATTTATTTTCGCCTTATATGTAGTGATTGTGCATTTTTATCAACTTCACATTTTTCTGCATAGAGTTGTTGATGCAGGAATAACCCGAAATGGATATGTATTATTTATTTACACCATTTGAGCATCAAATTTTGTCCATGAGGTTGAAGTTATATTTTGAAATTCAAACATTACTTTTTTGACTGGTAGAATTGAAACTCAGTCATTTAATTGAACCCTGATCTACTTAGAAATAAAATACTAATTTGTACACAAATTCTGCGGGATATGTTTTCAAATTCTGATATTTATTTGTTACCAATTTCAGAGCATGTGAAGCTTTGCAGACTTGCCTCCCTGAGTTGTTAAAAGATGGCACTTTCAACGGTTGCCTTCGGGTAAGTTATATACATAGAAAGCAACCATTTTCGATATACACATGCAAGTTGATTAGCATGTTCATGAACTGAAATTTATTATGTTTTGTTAACATAAATCAAGAACATAGCTCTCTGATACATACTTCCATTGCAGTTCATAAGGTTTTCGAGGAAAGCAAATGGTAATTTGCCATAGCAAATTTGATCAAGATTTCGTCTTCCATGATACAGTCCTTTTCATGCCTACGATTCAGTAAATTATAGACGATGTATTTACTTGTAAGGTTATATAAACACAGATGCATTAACCATGCATTCTCATATGATAGTGCTGTATTCCCTCATATGTCAATTGATTTTAAACCCTGGATCTGTAACCCCAAACTATCTTATCGAACTTGGTAACCATGCTTCTATGATTTTGAGTGCACATGTTTCTAACGTAAAGAAATAGGGAAATTACCATAAGAAATTCAATAACGTACATTTCACACCATTTTATTCGCACGGAGTTGTTATATAACATGTCCATTTCACATGATTTTGAGTGCACTTGTTTCTTTCACAAAGAAAGAGGGAAATTACCATAAGAGATTCAATAATGTACAATTATGTGACTCTACAATCGGCTGTTTCTAAAAAGCTAATATGTATGCAAACTTATAATGAGTGCAGGATGATCCAGCAACTCAAAGATGGCTTCAGCAATTGCTTCACAACGTGTCTACGGGAAATATGGCTGCTGGTCTTCAAGCTGGGGGATTTGAGCATATGATGCCTAACTAATCATCAATTTCCTCTTCCACGTATCTGTATTATTATAGATCTTATGCTTATTTTGGTTGCCTGTGTTATCCTTGTACATGTAAGTTATATTTGTGTAGAATAAATTTCACAACCTTTTAGTTCTTGTGAATGCTTAATTAGGTTTGATTTGCCAGCATACGTAGTTTTGTACACCAAATTGTTGTTTATAAATCTCATACTACTTGTGTAACATATTAGTGGAATCCATTGTTTTTTCTTCTCATCAATTAAATATGATTACGGAAG

Functional annotation

Database	accession number	e-value	annotation
nr	BAK03539.1	6.1e-29	predicted protein
Swissprot	Q6IP65.1	1.4e-22	Cell differentiation protein RQCD1 homolog
trEMBL	A0A453CRG7	5.2e-30	CCR4-NOT transcription complex subunit 9

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20800.1	86.49	1e-32	134		Cell differentiation, Rcd1-like protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03594	AT3G20800.1	74	10	0	1	74	187	260	86.49	1e-32	134
AfisC4G03594	AT5G12980.1	74	13	0	1	74	183	256	82.43	3e-31	129
AfisC4G03594	AT2G32550.1	76	49	1	1	74	206	281	32.89	2e-07	50.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04078.10	Rcd1	Family	1	85	116.1	1.5e-33

Gene Ontology

Accession	Ontology	Name
GO:0000289	P	nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932	C	cytoplasmic mRNA processing body
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0006977	P	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007548	P	sex differentiation
GO:0017148	P	negative regulation of translation
GO:0019221	P	cytokine-mediated signaling pathway
GO:0019904	F	protein domain specific binding
GO:0030015	C	CCR4-NOT core complex
GO:0031047	P	gene silencing by RNA
GO:0032968	P	positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033147	P	negative regulation of intracellular estrogen receptor signaling pathway
GO:0042803	F	protein homodimerization activity
GO:2000327	P	positive regulation of ligand-dependent nuclear receptor transcription coactivator activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12606	RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9	EC:-	RNA degradation	ko03018

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network