Gene information

Detail information of AfisC4G03750

Location

Gene	Chr	Start	End	Strand
AfisC4G03750	chr4	703959692	703960571	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_026395953.1	9.6e-28	glycine-rich protein 2-like
Swissprot	P27484.1	2.8e-24	Glycine-rich protein 2
trEMBL	A0A4Y7IBV0	6.9e-28	CSD domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36020.1	47.12	4e-33	137	AtCSP1;CSDP1;CSP1	cold shock domain protein 1

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03750	AT4G36020.1	208	89	3	1	187	6	213	47.12	4e-33	137
AfisC4G03750	AT4G36020.1	62	15	1	126	187	254	295	43.55	5e-06	47.8
AfisC4G03750	AT2G21060.1	188	68	2	5	190	14	198	61.17	3e-31	131

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00313.19	CSD	Domain	7	71	93.3	5.3e-27
PF00098.20	zf-CCHC	Domain	126	142	32.3	6.1e-08
PF00098.20	zf-CCHC	Domain	173	188	31.1	1.4e-07

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001072	F	transcription antitermination factor activity, RNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003729	F	mRNA binding
GO:0051087	F	chaperone binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005507	F	copper ion binding
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0008156	P	negative regulation of DNA replication
GO:0008270	F	zinc ion binding
GO:0009269	P	response to desiccation
GO:0009631	P	cold acclimation
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009793	P	embryo development ending in seed dormancy
GO:0009826	P	unidimensional cell growth
GO:0009845	P	seed germination
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010501	P	RNA secondary structure unwinding
GO:0031564	P	transcription antitermination
GO:0032508	P	DNA duplex unwinding
GO:0042594	P	response to starvation
GO:0043457	P	regulation of cellular respiration
GO:0048443	P	stamen development
GO:0060567	P	negative regulation of DNA-templated transcription, termination

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K03704	cspA; cold shock protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network