result

Gene information

Detail information of AfisC4G03846

Location

Gene	Chr	Start	End	Strand
AfisC4G03846	chr4	720974457	720976685	-

Sequences

CDS

Protein

Gene

>AfisC4G03846
ATGCCTCCCAGTCTCTACCTCGATGACTATACACATCAACAATATCAAATCGACGACGACTACTACAACGACCACAACGAGTACCAAGGAATCATCTCCAAAAAACCCAAATTCCAACCCTCTCTCACCACCCCCTTCCACACCCTCCAAACCTGCAGCGCCGCCAGCCTCAGCCACCCACCCCCACCCCACTCACCCACCGGGTCCAAAACCCGGCTCCGCTTCCGCGACCACGTCACCCGCTACAAGCGCAAGCTCTCCTCCCTCAACCTCATCGCCGATCACGAGGACACTTTCCCGGACCTGGACCCGAACCCAGGATCCGACGCAATGCGGCTGGTCCAGCTCCTGATCTCGTGCGCGGAAGCTGTGGCCTGCCGCGACCGCGTGCAGGCCGGGGCCCTCCTGTCCGAGCTCAGGGCCCGGGCCCTTGTCCTCGGCACCGCCTTCCAGCGCGTGGCCTCCTGCTTCGTGCAGGGCCTGTCCGACCGCTTATGTTTACTTCATCCGCTCGGCGCAGTAGGTGTGCTGGTTGCTCCGGTCAGCGATGGAGGCTCGGATCGGCGGGGGGAGGAGGCGCTCGCCCTGGCCTACGATCTTTGCCCCTACATCAAGTTTGGGCACTTTGTGGCTAACGCCTCCATAATTGAAGCCTTTGAGGGAGAGAGCTCCGTCCATGTTGTTGACCTTGGGTTGTCCCTTGGCCTTCGTCGTGGGGAGCAGTGGCGCACGCTTTTGCAAAGCCTCGCCCACCGTACTAGTCTACCAATCCGTCGCGTCCGCATCACTGGCGTTGGTACTGTTCAATTAATATTTATACACACATACATATATATTTATACACGCAAACACAAAACCTAACATGATCAAAGCCAGATTTTCTTTCTAGTAAGTTTTCAATGTACAAATCCTTTGTCCTTCTACGTGTTCAATGTGCCCACTTGGATCTTAGTCAGCCATGACATTTATCTAATCAATAAGTGAATGCATAAAGTATACAAAAGCATCCTTTATTTAACATTTTCTTTTTTTCTTAAAAAAAGTAAACTAAACTAAACAACCTATGGTTCTAATAATCAACCAAGATAAACATATCAAAGTTATCTCATTTCAATAGCAAATCATATCTGGTGCTATATGTCATTTTTAACAGCAAAAGAAGCCATTATTGACTTTTGTACAAGCATCTCTAAGCCAAAAAATTGCAGTGTTTACTGTGAAAGGTTGATGACATGCAAAATTTTAGAGATTGAAAATGTTCACATAGTCCTTTAAGCATATATTCATGCAGAACTACAGCTACATATATTTCGAGGAAGATATTTGATTGCAGATTGTTCTTTAACAGGTACATGCGCCGAGAAGCTCGAAAGCATAGGAGAATCATTGACATCCTACGCCCGAACTCTAGGAGTGCCTTTCGAGTTCAAATCCATTTTAAAGAGTTTCGAAAATCTATCTACCAAAGATTTCGGGATAGAGGAGGGGGAAGCGGTGGCGGTGAGCAGCGTGCTGCAGCTGCACTGTGTAGTAAAGGAGAGCAGAGGGGCGTTGAACTCAGTCTTACAGATGATACACGAGATCGGGCCGAGGGTGATGGTTCTGGTGGAGCAGGACTCGAGCCACAACGGGCCGTTCTTCCTGGGCCGGTTCATGGAGGCCCTGCATTACTATTCTGCGATATTTGACGCGATGGACGCGGCGCTGCCGAGGTATGATACGAAGAGGGCGAAGGTGGAGCAGTTTTACTTTGCGGAGGAGATCAAGAACATTGTGAGCTGCGAAGGGCCGGCTAGGGTTGAGAGGCACGAGAGGGTGGATCAGTGGAGGAGAAGGATGAGTCGGGCTGGATTTCAGGCCCAGCCCATTAAGATGGTTAATCAGGCTAAGAGTTGGATGGCTGGGATTGATGCCTGTGAGGGGTATACGATTACCGAGGAGATGGGTTGCCTTGTTCTTGGATGGAAGAACAAGCCTATAATAGCGGCTTCGTGCTGGAAGTGTTAGGATGAAGTTCAACGACAGCGTTTGATTTATCCGTTATTGAATAAAAAGTTCAAGTGCTGCAGTATATGCCTGGCCAGTTTGCTTTTGTTGGAAAAATATGTGTGCTTTCTGAAGAAACAAGTATTTTTTCAGGAAAATTTCATTTTTTATTCTTATGTTCACTAATTTCATTGAATAGAGTGTAAAGTCATAATCTCTCAAATGTTGCAGAATTGTACATAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262267.1	5.2e-163	LOW QUALITY PROTEIN: DELLA protein GAI1-like
Swissprot	A0A1B1WAJ0.1	5.2e-152	Protein REQUIRED FOR ARBUSCULE DEVELOPMENT 1
trEMBL	A0A8B7CJ23	5.1e-160	GRAS family protein RAD1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66350.1	36.78	8e-66	248	RGL;RGL1	RGA-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03846	AT1G66350.1	416	224	13	76	484	124	507	36.78	8e-66	248
AfisC4G03846	AT1G14920.1	385	210	10	109	483	165	529	37.66	6e-65	245
AfisC4G03846	AT2G01570.1	385	218	10	109	483	217	581	35.58	7e-62	234

Ortholog group

Species	Genes
Allium cepa	g162362.t1
Allium fistulosum	AfisC4G03846
Allium sativum	Asa4G03041.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g67650.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	113	483	358.0	4.7e-107

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006351	P	transcription, DNA-templated
GO:0006808	P	regulation of nitrogen utilization
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010218	P	response to far red light
GO:0010233	P	phloem transport
GO:0033206	P	meiotic cytokinesis
GO:0042538	P	hyperosmotic salinity response
GO:0060255	P	regulation of macromolecule metabolic process
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:2000033	P	regulation of seed dormancy process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14494	DELLA; DELLA protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network