result

Gene information

Detail information of AfisC4G03900

Location

Gene	Chr	Start	End	Strand
AfisC4G03900	chr4	732905607	732909127	-

Sequences

CDS

>AfisC4G03900
ATGAAATACAGAGGAGCTGCAATAAAGTACACTCTTTTCATTCTCCTTATCAAAATTCATCACATACTCTCTCAAATCCCCACCTGCAACACAAATGATCTCAATTCATTGCACGAATTCATGAAGTCCCTCAACTCCACAATTCCAAGTTGGAATTTCAATGCTACAAATTGCTGTGATTGGAGAGGAATCGATTGCAATATTCAAGGAAGAGTAATTGGATTGGATCTTTTCAACATGAACTTAAAAGGGCCTATTTCCAGCTCCTTAACTAATTTGGATCAGCTGAAAAGATTGAATCTTTCACTCAATTCATTCAATGGAATCGTTCCTAAGCAACTATTCAAACTTCACCAAGTAGAGCTTCTCGATTTAAGCTGTAATGAATTATCCGGGGATATTCCATTCAATTCGGACCTTCCTACAATCCAAATTTTCAATATTTCATTCAACCTCTTCAATTCTACACATCCAATACTTCAAGGTTCCAAAAAGCTGAGTTCTTTTGATATAAGTTACAACAGTTTCAATGGCAATATCAATACTAGCATTTGCAATGATTGGGATTCAATAAAAGTTCTTCGATTTTCAGGTAATCAGTTTTCGGGTAAATTTCCTATCGGGTTCGGAAACTGCACTTCACTTACTGAGCTGTCTGTTGATACAAATTTGATCTCAGGCAGTTTACCTGAAGATTTGTTCAAGTTGTTTTCATTAACTAAGTTGAATGTTCAAGATAATGATATATCAGACTCTTTAAATACTGCTATCACTAACCTTTCCAATCTTACTCACTTTGATATTTCATTAAACAAATTTTTTGGAAATATTCCTGATATTTTCAACAAATTACCAAAATTAGAGTGCTTTTCTGCACAGTCTAATAGCTTTAATGGTCTATTGCCTTCATCATTATCTAACCTATCATCTCTTAAATTTCTCAGTTTAAGAAACAATTCATTATCTGGTACAATCAGTCTAGATTTCACTACCTTGCCTGGACTTACTTCTCTTGATCTTGGTTCGAATTTGTTTACTGGGTCGATTCCTTCTCAGTTATCTCAATGTTTAGAATTGAAAACTGTGAATTTGGCAAACAATACTCTTACTGGACAAATACCTGAAACTTTCAAGAACTTGAATTCATTATCATATCTCTCACTTTCTAAAAACAATCTGTCTAATGTATCTTCTGCACTAGAGATCCTACAACAGTGTTCTAATCTCGCTAGCTTAGTCCTCACAAGAAATTTTTTCAATGAAGAAATACCCACAAGTTCCACATTAAAGTTTTCGAACCTGGAAGTTTTTGTAATTCCTAACTGCGGGCTATCGGGTTCGGTTCCGAATTGGTTGAATAATTGCCCGAAACTGAAAGTTTTGGACTTATCATGGAATAGACTACAAGGGCAGATTCCAATATGGATAGGCAAGCTGGACCATTTGTTCTACCTTGACTTATCGAATAATTCACTATCGGGTACGGTACCCGAAAGCTTATCGGATATGAAGGCAATGATATCTTCAGTCAGTTCATCGCAAATGATACCTCAAGACTTTCCTTTCTTCATCAGGAGGAACGAGTCTGGTAAAGGGTTGCAGTACAAGCAGATAAGCAGCTTTCCGCCTTCTATCATTCTTTGCAAGAACTTGCTTACCGGGTCTATTTTTCCTGGGTTTGGTAACCTTAAAAAGCTACATGTGTTGGATTTGAGTGATAACAGGCTATCGGGTACCATACCCGATGTGTTATCGAACATGTCAAGTCTAGAAGCATTGAATCTGTCTCATAATAATCTTACCGGCCCCATTCCTATTTCCTTAACCATGCTTAACTTTTTATCAAGTTTCGATGTTTCTTATAACAACTTGCAAGGAAAGGTTCCTCCAGGAGGGCAATTCTCGACCTTTTCAAATTCGTCCTTCGAAGGGAACCCTAATCTTTGTAGGGCAAGTTGCGAGGAGGGTCAAGTAGGTTCGATGACAAAACATGGGAAGGACAAAATAGTAATTGTGGGTATGGCTCTGGGTATCGGGCTTGGCACAGCCCTACTTCTCGCTGTAGTGTACTTGTTTGTGTCTAAAACCAATTCAAGAAAAGTCACCTCGAAGGAGGAAGTCGACTCAAACGGGCCTTTAGAGCCTGCGGGCTCAAGAGTGGTCCTCCTATTTCAAAATCCAGACAACAAGGAACTTACATTCTCGGACATAATGAAAGCCACGGACAACTTCTCAGAGTTGAACATAGTCGGGTGCGGTGGATTCGGGTTGGTCTACAAAGCGACCCTACCCGGTGGCAAAAAGGTCGCTATAAAGCGCCTTTCGGGTGATTATGGTCAAATGGAGCGAGAATTCCATGCCGAGGTCGAGTCCTTGTCTAGGGCACAACACAAAAACCTTGTGCTCCTCCAAGGCTATTGTAAATTCGGCAATGATCGTCTCCTAATCTACTCGTACATGGAAAACGGAAGCTTGGACTATTGGTTGCATGAAAAGCTCGACGAAGGGTCCACCCTAGATTGGAGGACTAGACTCAAAATTGCACAAGGGTCGGTTAAGGGCTTAGCGTACTTGCATCAATCTTGTGAACCTCATATACTACACCGTGATATCAAGTCAAGTAACATACTTCTTGATGAGAACTTTGAGGCACATTTAGCGGATTTCGGGTTGGCTAGACTTGTACTGCCCTACGATACTCACGTGACTACGGATCTGGTAGGGACTTTAGGGTATATACCTCCGGAGTATGGGCAGAGTTCTATAGCGACTTTTAAGGGAGATGTGTATAGTTTTGGGGTAGTTCTTTTGGAGCTGTTGACTGGTAAAAGGCCTGTGGATATGTCGAAGCCGAAGAGGTGTAGAGATTTAATATCATGGGTGTTGCAAATGAAGGAAGAGAAAAGAGAAAATGAGGTTTTTGATCCTTGTATTTATGACAAAGATGTTTCTGGGCAGATGAGTAAAATGCTTGATATTGCTTGTTTATGTTTAAGCAGTTCTCCTAAGTTGAGGCCTTTGACAAATCAGTTAGTTGTATGGCTTGATGATATTAGTAGTGTTGATGGTCATATAGTTAAGTGA

Protein

>AfisC4G03900
MKYRGAAIKYTLFILLIKIHHILSQIPTCNTNDLNSLHEFMKSLNSTIPSWNFNATNCCDWRGIDCNIQGRVIGLDLFNMNLKGPISSSLTNLDQLKRLNLSLNSFNGIVPKQLFKLHQVELLDLSCNELSGDIPFNSDLPTIQIFNISFNLFNSTHPILQGSKKLSSFDISYNSFNGNINTSICNDWDSIKVLRFSGNQFSGKFPIGFGNCTSLTELSVDTNLISGSLPEDLFKLFSLTKLNVQDNDISDSLNTAITNLSNLTHFDISLNKFFGNIPDIFNKLPKLECFSAQSNSFNGLLPSSLSNLSSLKFLSLRNNSLSGTISLDFTTLPGLTSLDLGSNLFTGSIPSQLSQCLELKTVNLANNTLTGQIPETFKNLNSLSYLSLSKNNLSNVSSALEILQQCSNLASLVLTRNFFNEEIPTSSTLKFSNLEVFVIPNCGLSGSVPNWLNNCPKLKVLDLSWNRLQGQIPIWIGKLDHLFYLDLSNNSLSGTVPESLSDMKAMISSVSSSQMIPQDFPFFIRRNESGKGLQYKQISSFPPSIILCKNLLTGSIFPGFGNLKKLHVLDLSDNRLSGTIPDVLSNMSSLEALNLSHNNLTGPIPISLTMLNFLSSFDVSYNNLQGKVPPGGQFSTFSNSSFEGNPNLCRASCEEGQVGSMTKHGKDKIVIVGMALGIGLGTALLLAVVYLFVSKTNSRKVTSKEEVDSNGPLEPAGSRVVLLFQNPDNKELTFSDIMKATDNFSELNIVGCGGFGLVYKATLPGGKKVAIKRLSGDYGQMEREFHAEVESLSRAQHKNLVLLQGYCKFGNDRLLIYSYMENGSLDYWLHEKLDEGSTLDWRTRLKIAQGSVKGLAYLHQSCEPHILHRDIKSSNILLDENFEAHLADFGLARLVLPYDTHVTTDLVGTLGYIPPEYGQSSIATFKGDVYSFGVVLLELLTGKRPVDMSKPKRCRDLISWVLQMKEEKRENEVFDPCIYDKDVSGQMSKMLDIACLCLSSSPKLRPLTNQLVVWLDDISSVDGHIVK

Gene

>AfisC4G03900
GTACAACTGTATAGAAAAAAATACTAGAGAAGAGAGTCAAAACCTACTTCTCTCTATTTCCTTTCTCTCCTCCTCTTCCTCCTCCATTTCTTTTTCTTGAAATTCTCAACATTCATTATATAACTGAGCCACCTCACAATCTCTTGGGATTTTCAATTCAGTTGTTTCCATTTGTAAGTTCTCACTGCTCCCTCCTCAATTTTCAGTTATTCAAGTTTATTACAGAGACAATTCAATTTTGAACAGATGAGTGTTCAAAACCTTAGATTATAGTTCTGAAAATTCCTTCCTTTTTCAATTTCAATCATAATTCATCCATCACCTTCCTCTTAATCAAAAATGAAATACAGAGGAGCTGCAATAAAGTACACTCTTTTCATTCTCCTTATCAAAATTCATCACATACTCTCTCAAATCCCCACCTGCAACACAAATGATCTCAATTCATTGCACGAATTCATGAAGTCCCTCAACTCCACAATTCCAAGTTGGAATTTCAATGCTACAAATTGCTGTGATTGGAGAGGAATCGATTGCAATATTCAAGGAAGAGTAATTGGATTGGATCTTTTCAACATGAACTTAAAAGGGCCTATTTCCAGCTCCTTAACTAATTTGGATCAGCTGAAAAGATTGAATCTTTCACTCAATTCATTCAATGGAATCGTTCCTAAGCAACTATTCAAACTTCACCAAGTAGAGCTTCTCGATTTAAGCTGTAATGAATTATCCGGGGATATTCCATTCAATTCGGACCTTCCTACAATCCAAATTTTCAATATTTCATTCAACCTCTTCAATTCTACACATCCAATACTTCAAGGTTCCAAAAAGCTGAGTTCTTTTGATATAAGTTACAACAGTTTCAATGGCAATATCAATACTAGCATTTGCAATGATTGGGATTCAATAAAAGTTCTTCGATTTTCAGGTAATCAGTTTTCGGGTAAATTTCCTATCGGGTTCGGAAACTGCACTTCACTTACTGAGCTGTCTGTTGATACAAATTTGATCTCAGGCAGTTTACCTGAAGATTTGTTCAAGTTGTTTTCATTAACTAAGTTGAATGTTCAAGATAATGATATATCAGACTCTTTAAATACTGCTATCACTAACCTTTCCAATCTTACTCACTTTGATATTTCATTAAACAAATTTTTTGGAAATATTCCTGATATTTTCAACAAATTACCAAAATTAGAGTGCTTTTCTGCACAGTCTAATAGCTTTAATGGTCTATTGCCTTCATCATTATCTAACCTATCATCTCTTAAATTTCTCAGTTTAAGAAACAATTCATTATCTGGTACAATCAGTCTAGATTTCACTACCTTGCCTGGACTTACTTCTCTTGATCTTGGTTCGAATTTGTTTACTGGGTCGATTCCTTCTCAGTTATCTCAATGTTTAGAATTGAAAACTGTGAATTTGGCAAACAATACTCTTACTGGACAAATACCTGAAACTTTCAAGAACTTGAATTCATTATCATATCTCTCACTTTCTAAAAACAATCTGTCTAATGTATCTTCTGCACTAGAGATCCTACAACAGTGTTCTAATCTCGCTAGCTTAGTCCTCACAAGAAATTTTTTCAATGAAGAAATACCCACAAGTTCCACATTAAAGTTTTCGAACCTGGAAGTTTTTGTAATTCCTAACTGCGGGCTATCGGGTTCGGTTCCGAATTGGTTGAATAATTGCCCGAAACTGAAAGTTTTGGACTTATCATGGAATAGACTACAAGGGCAGATTCCAATATGGATAGGCAAGCTGGACCATTTGTTCTACCTTGACTTATCGAATAATTCACTATCGGGTACGGTACCCGAAAGCTTATCGGATATGAAGGCAATGATATCTTCAGTCAGTTCATCGCAAATGATACCTCAAGACTTTCCTTTCTTCATCAGGAGGAACGAGTCTGGTAAAGGGTTGCAGTACAAGCAGATAAGCAGCTTTCCGCCTTCTATCATTCTTTGCAAGAACTTGCTTACCGGGTCTATTTTTCCTGGGTTTGGTAACCTTAAAAAGCTACATGTGTTGGATTTGAGTGATAACAGGCTATCGGGTACCATACCCGATGTGTTATCGAACATGTCAAGTCTAGAAGCATTGAATCTGTCTCATAATAATCTTACCGGCCCCATTCCTATTTCCTTAACCATGCTTAACTTTTTATCAAGTTTCGATGTTTCTTATAACAACTTGCAAGGAAAGGTTCCTCCAGGAGGGCAATTCTCGACCTTTTCAAATTCGTCCTTCGAAGGGAACCCTAATCTTTGTAGGGCAAGTTGCGAGGAGGGTCAAGTAGGTTCGATGACAAAACATGGGAAGGACAAAATAGTAATTGTGGGTATGGCTCTGGGTATCGGGCTTGGCACAGCCCTACTTCTCGCTGTAGTGTACTTGTTTGTGTCTAAAACCAATTCAAGAAAAGTCACCTCGAAGGAGGAAGTCGACTCAAACGGGCCTTTAGAGCCTGCGGGCTCAAGAGTGGTCCTCCTATTTCAAAATCCAGACAACAAGGAACTTACATTCTCGGACATAATGAAAGCCACGGACAACTTCTCAGAGTTGAACATAGTCGGGTGCGGTGGATTCGGGTTGGTCTACAAAGCGACCCTACCCGGTGGCAAAAAGGTCGCTATAAAGCGCCTTTCGGGTGATTATGGTCAAATGGAGCGAGAATTCCATGCCGAGGTCGAGTCCTTGTCTAGGGCACAACACAAAAACCTTGTGCTCCTCCAAGGCTATTGTAAATTCGGCAATGATCGTCTCCTAATCTACTCGTACATGGAAAACGGAAGCTTGGACTATTGGTTGCATGAAAAGCTCGACGAAGGGTCCACCCTAGATTGGAGGACTAGACTCAAAATTGCACAAGGGTCGGTTAAGGGCTTAGCGTACTTGCATCAATCTTGTGAACCTCATATACTACACCGTGATATCAAGTCAAGTAACATACTTCTTGATGAGAACTTTGAGGCACATTTAGCGGATTTCGGGTTGGCTAGACTTGTACTGCCCTACGATACTCACGTGACTACGGATCTGGTAGGGACTTTAGGGTATATACCTCCGGAGTATGGGCAGAGTTCTATAGCGACTTTTAAGGGAGATGTGTATAGTTTTGGGGTAGTTCTTTTGGAGCTGTTGACTGGTAAAAGGCCTGTGGATATGTCGAAGCCGAAGAGGTGTAGAGATTTAATATCATGGGTGTTGCAAATGAAGGAAGAGAAAAGAGAAAATGAGGTTTTTGATCCTTGTATTTATGACAAAGATGTTTCTGGGCAGATGAGTAAAATGCTTGATATTGCTTGTTTATGTTTAAGCAGTTCTCCTAAGTTGAGGCCTTTGACAAATCAGTTAGTTGTATGGCTTGATGATATTAGTAGTGTTGATGGTCATATAGTTAAGTGAGTATATAGAAGTTGATCAAGCTGTATATATATTTGCATTTTATTGAACAATTTATAAGTATAGATTACAATATACCACTTTTTTCTCATATACATCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260165.1	6.2e-222	phytosulfokine receptor 1-like
Swissprot	Q8LPB4.1	1.6e-166	Phytosulfokine LRR receptor kinase 1
trEMBL	A0A5P1F382	4.4e-222	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02220.1	54.34	0.0	1028	ATPSKR1;PSKR1	phytosulfokin receptor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC4G03900	AT2G02220.1	1003	420	8	29	1018	31	1008	54.34	1028
AfisC4G03900	AT5G53890.1	1033	496	14	12	1018	1	1028	48.98	922
AfisC4G03900	AT1G72300.1	1051	548	15	12	1020	31	1079	43.67	811

Ortholog group

Species	Genes
Allium cepa	g274927.t1
Allium fistulosum	AfisC4G03900
Allium sativum	Asa4G03097.1
Arabidopsis thaliana	AT2G02220.1
Oryza sativa	LOC_Os02g41890.1; LOC_Os04g57630.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	32	67	24.4	2.3e-05
PF00560.30	LRR_1	Repeat	457	473	11.5	0.33
PF13855.3	LRR_8	Repeat	545	600	34.0	1.7e-08
PF00069.22	Pkinase	Domain	745	1012	147.3	4.7e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001578	P	microtubule bundle formation
GO:0001653	F	peptide receptor activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005496	F	steroid binding
GO:0005524	F	ATP binding
GO:0005768	C	endosome
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009554	P	megasporogenesis
GO:0009556	P	microsporogenesis
GO:0009611	P	response to wounding
GO:0009647	P	skotomorphogenesis
GO:0009729	P	detection of brassinosteroid stimulus
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009826	P	unidimensional cell growth
GO:0009911	P	positive regulation of flower development
GO:0010224	P	response to UV-B
GO:0010234	P	anther wall tapetum cell fate specification
GO:0010268	P	brassinosteroid homeostasis
GO:0010584	P	pollen exine formation
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019901	F	protein kinase binding
GO:0031347	P	regulation of defense response
GO:0042803	F	protein homodimerization activity
GO:0043234	C	protein complex
GO:0045851	P	pH reduction
GO:0046777	P	protein autophosphorylation
GO:0046982	F	protein heterodimerization activity
GO:0048366	P	leaf development
GO:0060548	P	negative regulation of cell death
GO:1900140	P	regulation of seedling development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network